Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 Y_RNA.354-201ENST00000365448 111 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 SNORA63.7-201ENST00000365579 123 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 Y_RNA.494-201ENST00000384432 111 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 MIR520C-201ENST00000385005 87 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 MIR136-201ENST00000385207 82 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 MIR618-201ENST00000385287 98 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 RNU6-985P-201ENST00000410182 104 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 RN7SKP164-201ENST00000516138 266 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 Y_RNA.721-201ENST00000517207 102 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 AP003072.1-201ENST00000531740 145 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 MIR5000-201ENST00000577717 103 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 MIR4764-201ENST00000580680 88 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 snoU18.1-201ENST00000629629 71 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 AL442644.1-201ENST00000454390 3105 ntBASIC0.66□□□□□ -2.3
TRAV40A0A0B4J280 RNU6-1272P-201ENST00000362776 107 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-674P-201ENST00000363831 107 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.217-201ENST00000364214 105 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-654P-201ENST00000364373 107 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.380-201ENST00000365663 111 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1227P-201ENST00000383981 107 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNA5SP95-201ENST00000410319 137 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AC024067.1-201ENST00000426199 223 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 BTF3P11-201ENST00000426582 477 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AC004941.2-201ENST00000427009 228 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.641-201ENST00000459414 105 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNU7-21P-201ENST00000459430 62 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNU2-31P-201ENST00000516954 155 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 DEFB108E-201ENST00000524692 240 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AC023827.1-201ENST00000569247 97 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AC044792.1-201ENST00000593294 196 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AL049861.1-201ENST00000603130 150 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 AL355297.3-201ENST00000604082 446 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 JPX_2.1-201ENST00000614161 69 ntBASIC0.65□□□□□ -2.31
TRAV40A0A0B4J280 RNA5SP264-201ENST00000363115 107 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 RNU1-124P-201ENST00000363861 145 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 SNORD14E-201ENST00000364009 85 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.202-201ENST00000364083 110 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.330-201ENST00000365230 109 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1335P-201ENST00000365426 107 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1203P-201ENST00000410703 110 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AC063976.4-201ENST00000421971 163 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AC005534.2-201ENST00000431047 433 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 RPL39P39-201ENST00000455840 151 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 SNORA31.4-201ENST00000516049 129 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1338P-201ENST00000516328 91 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 MIR4714-201ENST00000580728 77 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 HSPE1P19-201ENST00000603327 295 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AL020996.3-201ENST00000606617 222 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AP001282.2-201ENST00000616149 309 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AC013791.1-201ENST00000616619 62 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 MIR6866-201ENST00000638146 69 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 AC023934.1-201ENST00000574529 2389 ntBASIC0.64□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1205P-201ENST00000363625 106 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.376-201ENST00000365638 108 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 MIR605-201ENST00000385078 83 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 MT-TW-201ENST00000387382 68 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AC007751.1-201ENST00000529260 376 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AC133485.1-201ENST00000567176 124 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AC138907.6-201ENST00000568401 126 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 MIR5692C2-201ENST00000577959 77 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AC012433.1-201ENST00000588916 398 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AL357312.1-201ENST00000603879 298 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AL021707.8-201ENST00000609428 183 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 AC015726.2-201ENST00000620112 122 ntBASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
TRAV40A0A0B4J280 MIR103A2-201ENST00000362154 78 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-238P-201ENST00000363313 106 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-899P-201ENST00000363947 107 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.237-201ENST00000364439 102 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.293-201ENST00000364908 93 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.326-201ENST00000365176 113 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.483-201ENST00000384380 101 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 SNORA80D-201ENST00000384488 135 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 MIR19B1-201ENST00000384829 87 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 MIR508-201ENST00000384857 115 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 MIR146A-201ENST00000385201 99 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1109P-201ENST00000391187 107 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 U8.17-201ENST00000391292 132 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 RNU4-57P-201ENST00000515980 135 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.666-201ENST00000516187 112 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 ACA64.5-201ENST00000516207 127 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 RNU7-25P-201ENST00000516544 62 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 SNORA27.4-201ENST00000516650 95 ntBASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.62□□□□□ -2.31
TRAV40A0A0B4J280 AL512605.2-201ENST00000592972 256 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms