Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Y_RNA.36-201ENST00000362602 112 ntBASIC0.86□□□□□ -2.27
DDX28Q9NUL7 SNORD113-8-201ENST00000363497 74 ntBASIC0.86□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.183-201ENST00000363882 113 ntBASIC0.86□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.354-201ENST00000365448 111 ntBASIC0.86□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.445-201ENST00000384168 102 ntBASIC0.86□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.509-201ENST00000384506 99 ntBASIC0.86□□□□□ -2.27
DDX28Q9NUL7 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.86□□□□□ -2.27
DDX28Q9NUL7 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
DDX28Q9NUL7 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.86□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.31-201ENST00000362574 102 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNA5SP48-201ENST00000363969 126 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNU6-1048P-201ENST00000364054 107 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.242-201ENST00000364473 110 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNU6-342P-201ENST00000384521 104 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 MIR802-201ENST00000390235 94 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNU6-308P-201ENST00000390957 107 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 SNORD115-46-201ENST00000390982 71 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.645-201ENST00000391229 102 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNU2-14P-201ENST00000411053 191 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 PMCHL1-202ENST00000423102 261 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 NDUFA4P2-201ENST00000489989 244 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 PDCD5P2-201ENST00000507570 312 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNU6-191P-201ENST00000516295 94 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 RNU6-830P-201ENST00000516353 107 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.715-201ENST00000517082 110 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.721-201ENST00000517207 102 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.85□□□□□ -2.27
DDX28Q9NUL7 MIR4300-201ENST00000581016 96 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 AC211469.2-201ENST00000605461 205 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 MIR376A1-201ENST00000616574 68 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 SEPT14P17-201ENST00000617978 177 ntBASIC0.85□□□□□ -2.27
DDX28Q9NUL7 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.85□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.28-201ENST00000362554 111 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.136-201ENST00000363444 102 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 SNORD114-26-201ENST00000363543 72 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 Y_RNA.813-201ENST00000364639 102 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 RNU6-823P-201ENST00000391042 103 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 MIR942-201ENST00000401111 86 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 SNRPGP14-201ENST00000435400 219 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 ACA64.5-201ENST00000516207 127 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 RNU11-2P-201ENST00000516898 142 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.84□□□□□ -2.27
DDX28Q9NUL7 RPL23AP91-201ENST00000569211 455 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 AC008507.4-201ENST00000585464 127 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 C8orf59P2-201ENST00000603441 271 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 AC104695.3-201ENST00000604052 296 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 MIR6857-201ENST00000613267 93 ntBASIC0.84□□□□□ -2.27
DDX28Q9NUL7 RNU4-90P-201ENST00000362773 141 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 SNORA25.3-201ENST00000363205 127 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.148-201ENST00000363557 117 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.330-201ENST00000365230 109 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.418-201ENST00000384029 102 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 SNORA26.5-201ENST00000391215 123 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 MIR1185-1-201ENST00000408598 86 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 MIR1252-201ENST00000408861 65 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 RNU6-101P-201ENST00000410323 104 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 FABP5P4-201ENST00000437203 171 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 RNU6-397P-201ENST00000516226 104 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 RNU6-897P-201ENST00000517135 105 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.83□□□□□ -2.28
DDX28Q9NUL7 MIR548AR-201ENST00000582191 57 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 Pinc.1-201ENST00000616452 154 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 AL160413.1-201ENST00000622780 310 ntBASIC0.83□□□□□ -2.28
DDX28Q9NUL7 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RNU6-899P-201ENST00000363947 107 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RNU6-268P-201ENST00000364174 107 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RNU6-144P-201ENST00000383951 107 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.569-201ENST00000384749 103 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RNU6-1067P-201ENST00000384752 107 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 MIR100-201ENST00000385259 80 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 MIR1278-201ENST00000408753 81 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.602-201ENST00000410535 92 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 AC006461.1-201ENST00000412637 326 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 HSPE1P25-201ENST00000455484 251 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RN7SKP164-201ENST00000516138 266 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RNU6-496P-201ENST00000516145 99 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 RNU6-988P-201ENST00000519081 107 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 MIR4653-201ENST00000585107 83 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 AC005357.1-201ENST00000588399 301 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 AC008133.2-201ENST00000624540 351 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 MIR6767-201ENST00000637302 66 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 AC134026.1-201ENST00000623249 2239 ntBASIC0.82□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.128-201ENST00000363391 112 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.380-201ENST00000365663 111 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.389-201ENST00000383924 113 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 RNU6-474P-201ENST00000384243 107 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.460-201ENST00000384255 102 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.540-201ENST00000384638 111 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.81□□□□□ -2.28
DDX28Q9NUL7 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.81□□□□□ -2.28
DDX28Q9NUL7 Y_RNA.631-201ENST00000459607 101 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 RNU6-764P-201ENST00000516396 105 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 MIR5000-201ENST00000577717 103 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.81□□□□□ -2.28
DDX28Q9NUL7 RAC1P9-201ENST00000604990 392 ntBASIC0.81□□□□□ -2.28
DDX28Q9NUL7 MIR4251-201ENST00000635819 61 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 183.1 ms