Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
ERCC4Q92889 RNU6-1082P-201ENST00000364574 107 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
ERCC4Q92889 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
ERCC4Q92889 MIR513C-201ENST00000401352 84 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 MIR548I2-201ENST00000408348 149 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 RNU6-588P-201ENST00000410281 105 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 RN7SKP192-201ENST00000411291 327 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.35□□□□□ -2.03
ERCC4Q92889 RNA5SP200-201ENST00000516360 103 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 RNA5SP364-201ENST00000516938 78 ntBASIC2.35□□□□□ -2.03
ERCC4Q92889 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
ERCC4Q92889 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
ERCC4Q92889 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.35□□□□□ -2.03
ERCC4Q92889 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
ERCC4Q92889 RNU6-199P-201ENST00000362954 107 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 SNORA67.3-201ENST00000384366 140 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 RNU6-440P-201ENST00000390882 105 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.34□□□□□ -2.03
ERCC4Q92889 RNA5SP272-201ENST00000516095 111 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 Y_RNA.714-201ENST00000517065 90 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 RNU6-365P-201ENST00000517113 106 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 AC007751.1-201ENST00000529260 376 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 AL365205.2-201ENST00000594586 68 ntBASIC2.34□□□□□ -2.03
ERCC4Q92889 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.34□□□□□ -2.03
ERCC4Q92889 Y_RNA.242-201ENST00000364473 110 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 SNORA16B-201ENST00000364674 135 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 RNU6-959P-201ENST00000384671 107 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 SNORD37.2-201ENST00000391075 66 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 RNA5SP501-201ENST00000410990 112 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 AL606753.1-201ENST00000427435 87 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 MTND4LP9-201ENST00000427694 174 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 SNRPGP14-201ENST00000435400 219 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 UBL5P3-201ENST00000475112 231 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 MIR1273D-201ENST00000577266 86 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 AP001340.1-201ENST00000624405 217 ntBASIC2.33□□□□□ -2.04
ERCC4Q92889 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
ERCC4Q92889 MIRLET7C-201ENST00000362160 84 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 U8.2-201ENST00000363156 134 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 SNORA25.7-201ENST00000364375 127 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 SNORD50B-201ENST00000364995 70 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 SNORD24-201ENST00000383884 75 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 Y_RNA.420-201ENST00000384043 110 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 RNU6-296P-201ENST00000384608 107 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 SNORA40-201ENST00000388090 126 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 RNA5SP450-201ENST00000411206 102 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 Y_RNA.783-201ENST00000613546 102 ntBASIC2.32□□□□□ -2.04
ERCC4Q92889 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
ERCC4Q92889 AL442644.1-201ENST00000454390 3105 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 RNU6-888P-201ENST00000363010 101 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 MIR548A2-201ENST00000384956 97 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
ERCC4Q92889 RN7SKP223-201ENST00000410582 62 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.31□□□□□ -2.04
ERCC4Q92889 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.31□□□□□ -2.04
ERCC4Q92889 RNU1-41P-201ENST00000516161 162 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 RNU1-48P-201ENST00000516400 162 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 RNU6-504P-201ENST00000516568 104 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 AC006441.5-201ENST00000612680 209 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.31□□□□□ -2.04
ERCC4Q92889 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
ERCC4Q92889 SNORD68-201ENST00000363214 84 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 RNU6-112P-201ENST00000363599 104 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 RNU6-1336P-201ENST00000383886 109 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 SNORA48.3-201ENST00000391081 134 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 MLLT10P1-201ENST00000418346 262 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 HSPE1P9-201ENST00000440046 311 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 AC090142.3-201ENST00000519012 385 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 MIR3935-201ENST00000583472 104 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 MIR6132-201ENST00000622083 109 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 AC091895.1-201ENST00000624494 256 ntBASIC2.3□□□□□ -2.04
ERCC4Q92889 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
ERCC4Q92889 AC245060.5-201ENST00000610778 3293 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 Y_RNA.265-201ENST00000364677 108 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 SNORD61-201ENST00000384252 73 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 Y_RNA.542-201ENST00000384641 111 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 SNORA64-201ENST00000384674 134 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 AL158823.1-201ENST00000418441 478 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 RNA5SP437-201ENST00000517249 129 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.29□□□□□ -2.04
ERCC4Q92889 MIR5089-201ENST00000580047 84 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 AL096840.1-201ENST00000603287 93 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 SNORA28-201ENST00000606769 126 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 MIR6873-201ENST00000622788 63 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 AC008555.8-201ENST00000623602 2168 ntBASIC2.29□□□□□ -2.04
ERCC4Q92889 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.28□□□□□ -2.04
ERCC4Q92889 SNORA4.2-201ENST00000365313 147 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 SNORA20-201ENST00000384662 132 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 MIR520A-201ENST00000384862 85 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 MIR624-201ENST00000385217 97 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 RNU6-460P-201ENST00000391158 108 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 CYCSP49-201ENST00000420810 319 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.28□□□□□ -2.04
ERCC4Q92889 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
ERCC4Q92889 STAG3L5P-204ENST00000443759 179 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 Y_RNA.666-201ENST00000516187 112 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 IGKV3-31-201ENST00000523109 329 ntBASIC2.28□□□□□ -2.04
ERCC4Q92889 MIR4648-201ENST00000580107 72 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 179.3 ms