Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Y_RNA.274-201ENST00000364714 101 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 Y_RNA.297-201ENST00000364950 91 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 RNU2-2P-201ENST00000410396 191 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 Y_RNA.622-201ENST00000411091 108 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 RNU6-847P-201ENST00000411115 108 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.28□□□□□ -2.04
SF3A1Q15459 AC092991.1-201ENST00000477176 376 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 SNORD77.4-201ENST00000516158 81 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 Z83818.1-201ENST00000603584 150 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 RNU2-4P-201ENST00000606190 192 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 AL365434.2-201ENST00000607979 234 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.28□□□□□ -2.04
SF3A1Q15459 Y_RNA.7-201ENST00000362352 102 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 RNU6-1020P-201ENST00000363684 107 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 RNU6-103P-201ENST00000363686 107 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 MIR516B2-201ENST00000385190 85 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 SCARNA8-201ENST00000515924 131 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
SF3A1Q15459 MIR4308-201ENST00000580634 81 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 MIR219B-201ENST00000637023 88 ntBASIC2.27□□□□□ -2.05
SF3A1Q15459 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
SF3A1Q15459 RNA5SP99-201ENST00000364020 114 ntBASIC2.26□□□□□ -2.05
SF3A1Q15459 SNORD38C-201ENST00000384381 69 ntBASIC2.26□□□□□ -2.05
SF3A1Q15459 RNU4-70P-201ENST00000384579 139 ntBASIC2.26□□□□□ -2.05
SF3A1Q15459 MIR934-201ENST00000401241 83 ntBASIC2.26□□□□□ -2.05
SF3A1Q15459 AL445646.1-201ENST00000431784 216 ntBASIC2.26□□□□□ -2.05
SF3A1Q15459 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.26□□□□□ -2.05
SF3A1Q15459 MIR4662B-201ENST00000579498 81 ntBASIC2.26□□□□□ -2.05
SF3A1Q15459 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.26□□□□□ -2.05
SF3A1Q15459 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
SF3A1Q15459 SNORD33-201ENST00000362761 85 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 SNORD1A-201ENST00000364968 72 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 RNU6-1228P-201ENST00000391014 107 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 RNU6-138P-201ENST00000515952 107 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 Y_RNA.797-201ENST00000515977 94 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 RNU6-322P-201ENST00000516010 103 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 RNU6-548P-201ENST00000517083 115 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 MIR3935-201ENST00000583472 104 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 FAM106DP-201ENST00000586416 501 ntBASIC2.25□□□□□ -2.05
SF3A1Q15459 MIR302D-201ENST00000362275 68 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 Y_RNA.238-201ENST00000364441 102 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 RNU6-200P-201ENST00000364743 107 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 RNU6-1138P-201ENST00000365359 106 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 RNY3P5-201ENST00000384127 102 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 RNU6-1065P-201ENST00000384513 106 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 MIR526A1-201ENST00000384897 85 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 SNX2P2-201ENST00000424553 323 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 RNU6-922P-201ENST00000516753 99 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 MIR4422-201ENST00000581938 83 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 AL353997.5-201ENST00000618886 171 ntBASIC2.24□□□□□ -2.05
SF3A1Q15459 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
SF3A1Q15459 Y_RNA.182-201ENST00000363880 111 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 RNU6-1318P-201ENST00000365389 103 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 SNORA2.2-201ENST00000365473 135 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 Y_RNA.571-201ENST00000384753 98 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 RNU2-70P-201ENST00000410718 179 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 Y_RNA.793-201ENST00000411222 111 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 AC015922.2-201ENST00000435593 184 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.23□□□□□ -2.05
SF3A1Q15459 RNU6-917P-201ENST00000516294 104 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 RNU6-1299P-201ENST00000516316 100 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 MIR3671-201ENST00000580455 88 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 MIR4744-201ENST00000581563 82 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 AC015726.2-201ENST00000620112 122 ntBASIC2.23□□□□□ -2.05
SF3A1Q15459 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.23□□□□□ -2.05
SF3A1Q15459 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SF3A1Q15459 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
SF3A1Q15459 RNU6-728P-201ENST00000365375 104 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 Y_RNA.432-201ENST00000384087 111 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 MIR136-201ENST00000385207 82 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 AL451046.2-201ENST00000403074 277 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 Y_RNA.644-201ENST00000459006 113 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 Y_RNA.674-201ENST00000516362 113 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 RNU6-126P-201ENST00000516685 103 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 AC090142.3-201ENST00000519012 385 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 AC012493.3-201ENST00000604494 112 ntBASIC2.22□□□□□ -2.05
SF3A1Q15459 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
SF3A1Q15459 RNU6-268P-201ENST00000364174 107 ntBASIC2.21□□□□□ -2.06
SF3A1Q15459 RNU6-47P-201ENST00000383866 107 ntBASIC2.21□□□□□ -2.06
SF3A1Q15459 SNORA79-201ENST00000408376 140 ntBASIC2.21□□□□□ -2.06
SF3A1Q15459 AL603825.1-201ENST00000438481 80 ntBASIC2.21□□□□□ -2.06
SF3A1Q15459 AL121914.1-201ENST00000450188 156 ntBASIC2.21□□□□□ -2.06
SF3A1Q15459 AL138752.1-201ENST00000452964 351 ntBASIC2.21□□□□□ -2.06
SF3A1Q15459 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SF3A1Q15459 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
SF3A1Q15459 SNORD45.3-201ENST00000363836 72 ntBASIC2.2□□□□□ -2.06
SF3A1Q15459 SUMO2P12-201ENST00000405924 140 ntBASIC2.2□□□□□ -2.06
SF3A1Q15459 MTND5P15-201ENST00000434246 349 ntBASIC2.2□□□□□ -2.06
SF3A1Q15459 RN7SL274P-201ENST00000492268 272 ntBASIC2.2□□□□□ -2.06
SF3A1Q15459 AC090049.2-201ENST00000550377 109 ntBASIC2.2□□□□□ -2.06
SF3A1Q15459 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.2□□□□□ -2.06
SF3A1Q15459 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
SF3A1Q15459 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
SF3A1Q15459 Y_RNA.121-201ENST00000363309 113 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 Y_RNA.486-201ENST00000384398 107 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 MIR15B-201ENST00000385045 98 ntBASIC2.19□□□□□ -2.06
SF3A1Q15459 RNU6-918P-201ENST00000391219 106 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms