Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 Y_RNA.521-201ENST00000384560 114 ntBASIC1.5□□□□□ -2.17
LMO4P61968 SNORA40-201ENST00000388090 126 ntBASIC1.5□□□□□ -2.17
LMO4P61968 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
LMO4P61968 RNA5SP467-201ENST00000391274 118 ntBASIC1.5□□□□□ -2.17
LMO4P61968 RNU2-51P-201ENST00000410708 197 ntBASIC1.5□□□□□ -2.17
LMO4P61968 MTND4LP9-201ENST00000427694 174 ntBASIC1.5□□□□□ -2.17
LMO4P61968 AC092991.1-201ENST00000477176 376 ntBASIC1.5□□□□□ -2.17
LMO4P61968 SNORA25.15-201ENST00000516487 89 ntBASIC1.5□□□□□ -2.17
LMO4P61968 RNU6-250P-201ENST00000516958 103 ntBASIC1.5□□□□□ -2.17
LMO4P61968 MIR3169-201ENST00000578032 83 ntBASIC1.5□□□□□ -2.17
LMO4P61968 MIR548AI-201ENST00000579940 88 ntBASIC1.5□□□□□ -2.17
LMO4P61968 AC005786.1-201ENST00000588553 154 ntBASIC1.5□□□□□ -2.17
LMO4P61968 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.5□□□□□ -2.17
LMO4P61968 AL096840.1-201ENST00000603287 93 ntBASIC1.5□□□□□ -2.17
LMO4P61968 AL353149.1-201ENST00000610667 244 ntBASIC1.5□□□□□ -2.17
LMO4P61968 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.5□□□□□ -2.17
LMO4P61968 AL365222.1-201ENST00000614661 98 ntBASIC1.5□□□□□ -2.17
LMO4P61968 MIR338-201ENST00000636369 67 ntBASIC1.5□□□□□ -2.17
LMO4P61968 U6.108-201ENST00000637764 58 ntBASIC1.5□□□□□ -2.17
LMO4P61968 AP000553.5-201ENST00000641933 54 ntBASIC1.5□□□□□ -2.17
LMO4P61968 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
LMO4P61968 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
LMO4P61968 RNU6-1336P-201ENST00000383886 109 ntBASIC1.49□□□□□ -2.17
LMO4P61968 Y_RNA.432-201ENST00000384087 111 ntBASIC1.49□□□□□ -2.17
LMO4P61968 MIR562-201ENST00000384894 95 ntBASIC1.49□□□□□ -2.17
LMO4P61968 SNORA48.1-201ENST00000390879 135 ntBASIC1.49□□□□□ -2.17
LMO4P61968 RNU6-460P-201ENST00000391158 108 ntBASIC1.49□□□□□ -2.17
LMO4P61968 AL627390.1-201ENST00000396055 340 ntBASIC1.49□□□□□ -2.17
LMO4P61968 AL117342.1-201ENST00000404861 406 ntBASIC1.49□□□□□ -2.17
LMO4P61968 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.49□□□□□ -2.17
LMO4P61968 SNORD77.4-201ENST00000516158 81 ntBASIC1.49□□□□□ -2.17
LMO4P61968 RNU7-99P-201ENST00000516271 62 ntBASIC1.49□□□□□ -2.17
LMO4P61968 RNU6-1146P-201ENST00000516282 102 ntBASIC1.49□□□□□ -2.17
LMO4P61968 RNU6-197P-201ENST00000516680 100 ntBASIC1.49□□□□□ -2.17
LMO4P61968 RNU6-971P-201ENST00000516920 106 ntBASIC1.49□□□□□ -2.17
LMO4P61968 MIR3646-201ENST00000578301 84 ntBASIC1.49□□□□□ -2.17
LMO4P61968 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.49□□□□□ -2.17
LMO4P61968 AC120024.3-201ENST00000603167 156 ntBASIC1.49□□□□□ -2.17
LMO4P61968 AP000942.3-201ENST00000603702 160 ntBASIC1.49□□□□□ -2.17
LMO4P61968 MIR8081-201ENST00000611533 95 ntBASIC1.49□□□□□ -2.17
LMO4P61968 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.49□□□□□ -2.17
LMO4P61968 MIR6844-201ENST00000637122 62 ntBASIC1.49□□□□□ -2.17
LMO4P61968 Y_RNA.91-201ENST00000363042 107 ntBASIC1.48□□□□□ -2.17
LMO4P61968 Y_RNA.140-201ENST00000363474 103 ntBASIC1.48□□□□□ -2.17
LMO4P61968 RNU6-978P-201ENST00000364371 103 ntBASIC1.48□□□□□ -2.17
LMO4P61968 RNU6-1082P-201ENST00000364574 107 ntBASIC1.48□□□□□ -2.17
LMO4P61968 SNORA16.1-201ENST00000364597 132 ntBASIC1.48□□□□□ -2.17
LMO4P61968 RNA5SP190-201ENST00000365222 118 ntBASIC1.48□□□□□ -2.17
LMO4P61968 SNORA22C-201ENST00000384614 134 ntBASIC1.48□□□□□ -2.17
LMO4P61968 Y_RNA.542-201ENST00000384641 111 ntBASIC1.48□□□□□ -2.17
LMO4P61968 MIR520G-201ENST00000385064 90 ntBASIC1.48□□□□□ -2.17
LMO4P61968 SNORA75.5-201ENST00000391291 81 ntBASIC1.48□□□□□ -2.17
LMO4P61968 SNORA79-201ENST00000408376 140 ntBASIC1.48□□□□□ -2.17
LMO4P61968 RNU6-588P-201ENST00000410281 105 ntBASIC1.48□□□□□ -2.17
LMO4P61968 RNU6-479P-201ENST00000516348 105 ntBASIC1.48□□□□□ -2.17
LMO4P61968 RNU6-1291P-201ENST00000516591 104 ntBASIC1.48□□□□□ -2.17
LMO4P61968 MIR378D2-201ENST00000580636 98 ntBASIC1.48□□□□□ -2.17
LMO4P61968 MIR2681-201ENST00000581814 105 ntBASIC1.48□□□□□ -2.17
LMO4P61968 MIR4713-201ENST00000582691 75 ntBASIC1.48□□□□□ -2.17
LMO4P61968 AC091178.2-201ENST00000584401 117 ntBASIC1.48□□□□□ -2.17
LMO4P61968 AL359075.3-201ENST00000613288 217 ntBASIC1.48□□□□□ -2.17
LMO4P61968 uc_338.4-201ENST00000616635 176 ntBASIC1.48□□□□□ -2.17
LMO4P61968 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.48□□□□□ -2.17
LMO4P61968 Y_RNA.218-201ENST00000364218 104 ntBASIC1.47□□□□□ -2.17
LMO4P61968 Y_RNA.251-201ENST00000364551 99 ntBASIC1.47□□□□□ -2.17
LMO4P61968 Y_RNA.253-201ENST00000364562 112 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-597P-201ENST00000365620 102 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-1080P-201ENST00000383982 107 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-1168P-201ENST00000390831 104 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-1154P-201ENST00000391001 104 ntBASIC1.47□□□□□ -2.17
LMO4P61968 SNORA17.3-201ENST00000391159 129 ntBASIC1.47□□□□□ -2.17
LMO4P61968 Y_RNA.621-201ENST00000411065 96 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU2-55P-201ENST00000411146 174 ntBASIC1.47□□□□□ -2.17
LMO4P61968 ATP5J2P3-201ENST00000451550 258 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-1299P-201ENST00000516316 100 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-313P-201ENST00000516317 112 ntBASIC1.47□□□□□ -2.17
LMO4P61968 RNU6-62P-201ENST00000516526 102 ntBASIC1.47□□□□□ -2.17
LMO4P61968 AL160236.1-201ENST00000556317 195 ntBASIC1.47□□□□□ -2.17
LMO4P61968 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.47□□□□□ -2.17
LMO4P61968 MIR4255-201ENST00000579351 72 ntBASIC1.47□□□□□ -2.17
LMO4P61968 AC097639.2-201ENST00000603159 172 ntBASIC1.47□□□□□ -2.17
LMO4P61968 JPX_2.1-201ENST00000614161 69 ntBASIC1.47□□□□□ -2.17
LMO4P61968 MIR6079-201ENST00000635807 62 ntBASIC1.47□□□□□ -2.17
LMO4P61968 AC018630.2-201ENST00000534866 2403 ntBASIC1.46□□□□□ -2.18
LMO4P61968 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LMO4P61968 RNA5SP338-201ENST00000410495 85 ntBASIC1.46□□□□□ -2.18
LMO4P61968 AC108667.1-201ENST00000428618 249 ntBASIC1.46□□□□□ -2.18
LMO4P61968 AC233266.1-201ENST00000454518 96 ntBASIC1.46□□□□□ -2.18
LMO4P61968 SNORD13-201ENST00000459299 104 ntBASIC1.46□□□□□ -2.18
LMO4P61968 NDUFA4P2-201ENST00000489989 244 ntBASIC1.46□□□□□ -2.18
LMO4P61968 RNU7-149P-201ENST00000516739 59 ntBASIC1.46□□□□□ -2.18
LMO4P61968 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.46□□□□□ -2.18
LMO4P61968 AC242852.1-201ENST00000612151 96 ntBASIC1.46□□□□□ -2.18
LMO4P61968 AC244015.1-201ENST00000622301 99 ntBASIC1.46□□□□□ -2.18
LMO4P61968 AC022513.1-201ENST00000624512 117 ntBASIC1.46□□□□□ -2.18
LMO4P61968 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
LMO4P61968 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.45□□□□□ -2.18
LMO4P61968 Y_RNA.71-201ENST00000362892 104 ntBASIC1.45□□□□□ -2.18
LMO4P61968 RNU6-1290P-201ENST00000362957 109 ntBASIC1.45□□□□□ -2.18
LMO4P61968 Y_RNA.261-201ENST00000364631 102 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms