Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.94
LIG1P18858 RNU6-442P-201ENST00000383968 104 ntBASIC2.9□□□□□ -1.95
LIG1P18858 SNORA6-201ENST00000384033 151 ntBASIC2.9□□□□□ -1.95
LIG1P18858 MIR9-1-201ENST00000385198 89 ntBASIC2.9□□□□□ -1.95
LIG1P18858 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.9□□□□□ -1.95
LIG1P18858 SNRPGP14-201ENST00000435400 219 ntBASIC2.9□□□□□ -1.95
LIG1P18858 AC099677.2-201ENST00000436385 175 ntBASIC2.9□□□□□ -1.95
LIG1P18858 AC007012.1-201ENST00000567192 175 ntBASIC2.9□□□□□ -1.95
LIG1P18858 MIR4513-201ENST00000581077 86 ntBASIC2.9□□□□□ -1.95
LIG1P18858 CTSLP2-204ENST00000629029 392 ntBASIC2.9□□□□□ -1.95
LIG1P18858 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
LIG1P18858 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.95
LIG1P18858 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
LIG1P18858 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIG1P18858 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIG1P18858 Y_RNA.366-201ENST00000365540 102 ntBASIC2.89□□□□□ -1.95
LIG1P18858 RNU6-32P-201ENST00000383948 107 ntBASIC2.89□□□□□ -1.95
LIG1P18858 RNU6-13P-201ENST00000384248 107 ntBASIC2.89□□□□□ -1.95
LIG1P18858 RNU6-106P-201ENST00000384405 107 ntBASIC2.89□□□□□ -1.95
LIG1P18858 Y_RNA.495-201ENST00000384435 112 ntBASIC2.89□□□□□ -1.95
LIG1P18858 RNU6-12P-201ENST00000384604 107 ntBASIC2.89□□□□□ -1.95
LIG1P18858 RNU6-41P-201ENST00000384741 107 ntBASIC2.89□□□□□ -1.95
LIG1P18858 MIR802-201ENST00000390235 94 ntBASIC2.89□□□□□ -1.95
LIG1P18858 MIR548O-201ENST00000408583 114 ntBASIC2.89□□□□□ -1.95
LIG1P18858 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.89□□□□□ -1.95
LIG1P18858 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.89□□□□□ -1.95
LIG1P18858 RNU7-193P-201ENST00000516723 65 ntBASIC2.89□□□□□ -1.95
LIG1P18858 MIR5092-201ENST00000583139 88 ntBASIC2.89□□□□□ -1.95
LIG1P18858 ZNF658B-202ENST00000615961 3375 ntBASIC2.89□□□□□ -1.95
LIG1P18858 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIG1P18858 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
LIG1P18858 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
LIG1P18858 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.89□□□□□ -1.95
LIG1P18858 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
LIG1P18858 RNU6-862P-201ENST00000362804 105 ntBASIC2.88□□□□□ -1.95
LIG1P18858 SNORD68-201ENST00000363214 84 ntBASIC2.88□□□□□ -1.95
LIG1P18858 SNORD14E-201ENST00000364009 85 ntBASIC2.88□□□□□ -1.95
LIG1P18858 Y_RNA.500-201ENST00000384466 111 ntBASIC2.88□□□□□ -1.95
LIG1P18858 RNA5SP402-201ENST00000517148 110 ntBASIC2.88□□□□□ -1.95
LIG1P18858 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
LIG1P18858 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
LIG1P18858 MIR450A1-201ENST00000362262 91 ntBASIC2.87□□□□□ -1.95
LIG1P18858 Y_RNA.85-201ENST00000363014 111 ntBASIC2.87□□□□□ -1.95
LIG1P18858 RNA5SP493-201ENST00000364115 91 ntBASIC2.87□□□□□ -1.95
LIG1P18858 RNU6-268P-201ENST00000364174 107 ntBASIC2.87□□□□□ -1.95
LIG1P18858 RNU6-1107P-201ENST00000364817 104 ntBASIC2.87□□□□□ -1.95
LIG1P18858 RNU6-1189P-201ENST00000383958 107 ntBASIC2.87□□□□□ -1.95
LIG1P18858 RPS29P24-201ENST00000486345 171 ntBASIC2.87□□□□□ -1.95
LIG1P18858 RNU7-28P-201ENST00000516759 62 ntBASIC2.87□□□□□ -1.95
LIG1P18858 MIR3169-201ENST00000578032 83 ntBASIC2.87□□□□□ -1.95
LIG1P18858 uc_338.28-201ENST00000612082 187 ntBASIC2.87□□□□□ -1.95
LIG1P18858 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIG1P18858 AP006437.1-201ENST00000641440 3685 ntBASIC2.87□□□□□ -1.95
LIG1P18858 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
LIG1P18858 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
LIG1P18858 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
LIG1P18858 RNU6-1084P-201ENST00000362498 107 ntBASIC2.86□□□□□ -1.95
LIG1P18858 SNORD115-28-201ENST00000363931 81 ntBASIC2.86□□□□□ -1.95
LIG1P18858 snoU2-30.1-201ENST00000365012 70 ntBASIC2.86□□□□□ -1.95
LIG1P18858 Y_RNA.336-201ENST00000365307 109 ntBASIC2.86□□□□□ -1.95
LIG1P18858 SNORA80E-201ENST00000384744 137 ntBASIC2.86□□□□□ -1.95
LIG1P18858 RNA5SP482-201ENST00000391269 118 ntBASIC2.86□□□□□ -1.95
LIG1P18858 RPS12P2-201ENST00000439728 269 ntBASIC2.86□□□□□ -1.95
LIG1P18858 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.86□□□□□ -1.95
LIG1P18858 TRBV12-1-201ENST00000479785 344 ntBASIC2.86□□□□□ -1.95
LIG1P18858 RNU7-25P-201ENST00000516544 62 ntBASIC2.86□□□□□ -1.95
LIG1P18858 MIR4672-201ENST00000583126 81 ntBASIC2.86□□□□□ -1.95
LIG1P18858 MIR4679-1-201ENST00000637619 75 ntBASIC2.86□□□□□ -1.95
LIG1P18858 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.86□□□□□ -1.95
LIG1P18858 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
LIG1P18858 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
LIG1P18858 MIR449A-201ENST00000362113 91 ntBASIC2.85□□□□□ -1.95
LIG1P18858 Y_RNA.37-201ENST00000362606 108 ntBASIC2.85□□□□□ -1.95
LIG1P18858 SNORA2.2-201ENST00000365473 135 ntBASIC2.85□□□□□ -1.95
LIG1P18858 RNU1-148P-201ENST00000384472 162 ntBASIC2.85□□□□□ -1.95
LIG1P18858 Y_RNA.547-201ENST00000384654 119 ntBASIC2.85□□□□□ -1.95
LIG1P18858 SNORD12C-201ENST00000386307 89 ntBASIC2.85□□□□□ -1.95
LIG1P18858 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.85□□□□□ -1.95
LIG1P18858 RNA5SP148-201ENST00000516527 94 ntBASIC2.85□□□□□ -1.95
LIG1P18858 SNORD45.4-201ENST00000516629 73 ntBASIC2.85□□□□□ -1.95
LIG1P18858 IGLV3-17-201ENST00000519099 244 ntBASIC2.85□□□□□ -1.95
LIG1P18858 MIR6817-201ENST00000615588 66 ntBASIC2.85□□□□□ -1.95
LIG1P18858 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
LIG1P18858 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
LIG1P18858 ZNF720P1-201ENST00000562403 1939 ntBASIC2.84□□□□□ -1.95
LIG1P18858 MIR21-201ENST00000362134 72 ntBASIC2.84□□□□□ -1.95
LIG1P18858 RNU6-349P-201ENST00000362402 107 ntBASIC2.84□□□□□ -1.95
LIG1P18858 Y_RNA.198-201ENST00000364013 98 ntBASIC2.84□□□□□ -1.95
LIG1P18858 RNU6-554P-201ENST00000410466 106 ntBASIC2.84□□□□□ -1.95
LIG1P18858 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.84□□□□□ -1.95
LIG1P18858 RPL23AP94-201ENST00000512518 302 ntBASIC2.84□□□□□ -1.95
LIG1P18858 RNU6-240P-201ENST00000516098 97 ntBASIC2.84□□□□□ -1.95
LIG1P18858 MIR3126-201ENST00000577443 74 ntBASIC2.84□□□□□ -1.95
LIG1P18858 AC006254.2-201ENST00000603259 279 ntBASIC2.84□□□□□ -1.95
LIG1P18858 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.84□□□□□ -1.95
LIG1P18858 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
LIG1P18858 RNA5SP68-201ENST00000363885 119 ntBASIC2.83□□□□□ -1.96
LIG1P18858 AC121758.2-201ENST00000553271 193 ntBASIC2.83□□□□□ -1.96
LIG1P18858 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.83□□□□□ -1.96
LIG1P18858 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms