Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MT-TI-201ENST00000387365 69 ntBASIC3.14□□□□□ -1.91
USP3Q9Y6I4 Z92545.1-201ENST00000411782 234 ntBASIC3.14□□□□□ -1.91
USP3Q9Y6I4 UQCRHP3-201ENST00000451503 251 ntBASIC3.14□□□□□ -1.91
USP3Q9Y6I4 AC141557.1-201ENST00000540982 400 ntBASIC3.14□□□□□ -1.91
USP3Q9Y6I4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.14□□□□□ -1.91
USP3Q9Y6I4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.14□□□□□ -1.91
USP3Q9Y6I4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.14□□□□□ -1.91
USP3Q9Y6I4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
USP3Q9Y6I4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
USP3Q9Y6I4 AL442644.1-201ENST00000454390 3105 ntBASIC3.13□□□□□ -1.91
USP3Q9Y6I4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 Y_RNA.10-201ENST00000362371 110 ntBASIC3.13□□□□□ -1.91
USP3Q9Y6I4 Y_RNA.107-201ENST00000363190 121 ntBASIC3.13□□□□□ -1.91
USP3Q9Y6I4 SNORA27-201ENST00000384323 126 ntBASIC3.13□□□□□ -1.91
USP3Q9Y6I4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 RNU6-893P-201ENST00000458841 100 ntBASIC3.13□□□□□ -1.91
USP3Q9Y6I4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 AC069114.2-201ENST00000604699 304 ntBASIC3.13□□□□□ -1.91
USP3Q9Y6I4 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.13□□□□□ -1.91
USP3Q9Y6I4 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
USP3Q9Y6I4 RNU6-661P-201ENST00000362409 107 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-34-201ENST00000362441 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-12-201ENST00000362583 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-29-201ENST00000362834 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-9-201ENST00000362912 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-21-201ENST00000362963 81 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-14-201ENST00000363090 81 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-13-201ENST00000363358 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-41-201ENST00000363608 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-11-201ENST00000363616 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-5-201ENST00000363633 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-39-201ENST00000363694 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-4-201ENST00000363810 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-16-201ENST00000363887 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-6-201ENST00000363942 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-42-201ENST00000364273 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-15-201ENST00000364809 81 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-1-201ENST00000364961 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-26-201ENST00000365067 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-10-201ENST00000365073 81 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-43-201ENST00000365503 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-36-201ENST00000365629 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 RNU6-163P-201ENST00000384396 106 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 Y_RNA.507-201ENST00000384500 99 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 AL022718.1-201ENST00000412004 84 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 AL139132.1-201ENST00000431587 344 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 FAM71BP1-201ENST00000604431 523 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 SNORD115-40-201ENST00000606510 82 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 MIR8054-201ENST00000620877 86 ntBASIC3.12□□□□□ -1.91
USP3Q9Y6I4 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP3Q9Y6I4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
USP3Q9Y6I4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.11□□□□□ -1.91
USP3Q9Y6I4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-1019P-201ENST00000364424 107 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 Y_RNA.299-201ENST00000364973 94 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 MIR488-201ENST00000365739 83 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-1104P-201ENST00000384723 104 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-816P-201ENST00000390914 107 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-1268P-201ENST00000391214 107 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-1239P-201ENST00000391310 107 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNA5SP274-201ENST00000410484 108 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 STAG3L5P-204ENST00000443759 179 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 AC114811.1-201ENST00000507207 168 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-998P-201ENST00000515894 101 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-109P-201ENST00000516364 107 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU2-35P-201ENST00000516446 142 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 RNU6-184P-201ENST00000516514 107 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 DEFB131E-201ENST00000532329 154 ntBASIC3.11□□□□□ -1.91
USP3Q9Y6I4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.1□□□□□ -1.91
USP3Q9Y6I4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP3Q9Y6I4 SNORA63D-201ENST00000364359 132 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 Y_RNA.241-201ENST00000364470 117 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 RNU6-851P-201ENST00000384565 107 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 RN7SKP200-201ENST00000410564 320 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 AL445687.1-201ENST00000439946 251 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 AC092185.1-201ENST00000491371 97 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 RNU7-6P-201ENST00000516845 62 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 RNU6-762P-201ENST00000517107 102 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 IGLV3-17-201ENST00000519099 244 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 AC022523.2-201ENST00000561045 150 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 MALAT1.1-201ENST00000618249 95 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.1□□□□□ -1.91
USP3Q9Y6I4 AC096644.4-201ENST00000563417 2912 ntBASIC3.1□□□□□ -1.91
USP3Q9Y6I4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.1□□□□□ -1.91
USP3Q9Y6I4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP3Q9Y6I4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USP3Q9Y6I4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP3Q9Y6I4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USP3Q9Y6I4 SNORD115-19-201ENST00000363098 82 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 SNORD115-18-201ENST00000363293 82 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 SNORD115-17-201ENST00000364612 82 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 RNU6-820P-201ENST00000384273 107 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 NDUFB4P4-201ENST00000404822 243 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 RNA5SP144-201ENST00000410846 116 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 AL606517.2-201ENST00000442855 241 ntBASIC3.09□□□□□ -1.91
USP3Q9Y6I4 AC107297.1-201ENST00000459991 176 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms