Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 RN7SKP51-201ENST00000410781 304 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 RNU6-453P-201ENST00000516819 85 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 RNA5SP364-201ENST00000516938 78 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 AP002004.2-201ENST00000531656 154 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 AC084364.2-201ENST00000546924 395 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 MIR5094-201ENST00000578766 85 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 MIR7111-201ENST00000619751 72 ntBASIC2.11□□□□□ -2.07
SSX2IPQ9Y2D8 Y_RNA.441-201ENST00000384123 112 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 SNORA48.1-201ENST00000390879 135 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 AL606845.1-201ENST00000404881 255 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 MIR1278-201ENST00000408753 81 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 HMGN2P19-201ENST00000425149 265 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 AC005840.1-201ENST00000498412 377 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 AC012493.3-201ENST00000604494 112 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 AC108706.1-201ENST00000611053 297 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 JPX_2.1-201ENST00000614161 69 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 U1.36-201ENST00000620684 176 ntBASIC2.1□□□□□ -2.07
SSX2IPQ9Y2D8 RNU6-1209P-201ENST00000363655 107 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 RNU6-1080P-201ENST00000383982 107 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 MT-TT-201ENST00000387460 66 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 SNORA40.18-201ENST00000391200 128 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 SUMO2P12-201ENST00000405924 140 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AL049830.1-201ENST00000468034 425 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 HMGN1P7-201ENST00000491722 313 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AC074198.2-201ENST00000508153 258 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 RNU2-56P-201ENST00000516826 190 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AC109810.1-201ENST00000534066 224 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 RPL23AP91-201ENST00000569211 455 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AC022217.4-201ENST00000604389 163 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AL021707.8-201ENST00000609428 183 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.09□□□□□ -2.07
SSX2IPQ9Y2D8 AC008555.8-201ENST00000623602 2168 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.796-201ENST00000364268 102 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 RNA5SP160-201ENST00000364866 120 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.799-201ENST00000364992 102 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 RNU6-728P-201ENST00000365375 104 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.357-201ENST00000365487 109 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 AC245047.3-201ENST00000429428 127 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 MTND2P29-201ENST00000438595 412 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 RNU6-1212P-201ENST00000517023 104 ntBASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
SSX2IPQ9Y2D8 SNORA1B-201ENST00000362535 133 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.226-201ENST00000364337 114 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.587-201ENST00000391210 103 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 RNU2-55P-201ENST00000411146 174 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 AC245047.4-201ENST00000433189 144 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 RNVU1-2-201ENST00000516326 135 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 RNU7-28P-201ENST00000516759 62 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.714-201ENST00000517065 90 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 MIR4431-201ENST00000579990 94 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 AP000942.3-201ENST00000603702 160 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 uc_338.4-201ENST00000616635 176 ntBASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.07□□□□□ -2.08
SSX2IPQ9Y2D8 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 Y_RNA.253-201ENST00000364562 112 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 RNA5SP109-201ENST00000391010 116 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 RNA5SP501-201ENST00000410990 112 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 RNA5SP450-201ENST00000411206 102 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 AL121914.1-201ENST00000450188 156 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 RPS27P1-201ENST00000450552 247 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 SNORD11-201ENST00000459124 84 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 RN7SL274P-201ENST00000492268 272 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 AC108729.3-201ENST00000513484 108 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 SUB1P4-201ENST00000566062 339 ntBASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SSX2IPQ9Y2D8 MIR126-201ENST00000362291 85 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 RNU1-17P-201ENST00000363022 152 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 SNORA63D-201ENST00000364359 132 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 RNU6-950P-201ENST00000384651 107 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 AL603908.1-201ENST00000406098 201 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 RNU6-394P-201ENST00000410735 107 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 RNU6-1135P-201ENST00000411083 103 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 SNRPGP10-201ENST00000432323 225 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 SEPT7P4-201ENST00000437076 306 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 MIR5089-201ENST00000580047 84 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 AL049861.1-201ENST00000603130 150 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 MIR8054-201ENST00000620877 86 ntBASIC2.05□□□□□ -2.08
SSX2IPQ9Y2D8 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 MIR520A-201ENST00000384862 85 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 MIR15B-201ENST00000385045 98 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 RNA5SP482-201ENST00000391269 118 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 SNORA79-201ENST00000408376 140 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 RNU4-43P-201ENST00000410628 137 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 CYCSP49-201ENST00000420810 319 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 AL606517.2-201ENST00000442855 241 ntBASIC2.04□□□□□ -2.08
SSX2IPQ9Y2D8 RNU6-126P-201ENST00000516685 103 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 225.1 ms