Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.93□□□□□ -2.1
VPS4AQ9UN37 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS4AQ9UN37 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
VPS4AQ9UN37 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.92□□□□□ -2.1
VPS4AQ9UN37 MIR367-201ENST00000362299 68 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 RNU6-1020P-201ENST00000363684 107 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 Y_RNA.229-201ENST00000364347 113 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 Y_RNA.253-201ENST00000364562 112 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 Y_RNA.508-201ENST00000384502 114 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 MIR616-201ENST00000385293 97 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 RNU6-493P-201ENST00000391321 108 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 AC108667.1-201ENST00000428618 249 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 HMGN1P7-201ENST00000491722 313 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.92□□□□□ -2.1
VPS4AQ9UN37 RNA5SP182-201ENST00000516064 82 ntBASIC1.92□□□□□ -2.1
VPS4AQ9UN37 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.92□□□□□ -2.1
VPS4AQ9UN37 MIR378A-201ENST00000362177 66 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 Y_RNA.7-201ENST00000362352 102 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 RNU6-1209P-201ENST00000363655 107 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 RNU4-41P-201ENST00000364426 143 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 U8.5-201ENST00000364528 136 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 RNU6-923P-201ENST00000364753 107 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 SNORA4.2-201ENST00000365313 147 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 Y_RNA.571-201ENST00000384753 98 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 AC233266.1-201ENST00000454518 96 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 AL049830.1-201ENST00000468034 425 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 OR9P1P-201ENST00000496431 281 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 RNA5SP481-201ENST00000516814 122 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 SNORA31.17-201ENST00000516953 127 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 RNU6-182P-201ENST00000516970 105 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 MIR4299-201ENST00000577899 72 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 AC072026.1-201ENST00000605023 201 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 AC242852.1-201ENST00000612151 96 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 AL773524.1-201ENST00000614065 229 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 FTX_2.1-201ENST00000618816 94 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 AC244015.1-201ENST00000622301 99 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.91□□□□□ -2.1
VPS4AQ9UN37 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
VPS4AQ9UN37 RNA5SP276-201ENST00000362580 94 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 RNU6-103P-201ENST00000363686 107 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 RNU6-682P-201ENST00000363843 106 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.233-201ENST00000364407 101 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 RNY3P5-201ENST00000384127 102 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 RNU6-950P-201ENST00000384651 107 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 SNORA40.18-201ENST00000391200 128 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 RNA5SP482-201ENST00000391269 118 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 MIR548I3-201ENST00000408378 149 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 MIR548I1-201ENST00000408810 149 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.793-201ENST00000411222 111 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 CYCSP49-201ENST00000420810 319 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 AC107393.1-201ENST00000512403 346 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 RNU6-453P-201ENST00000516819 85 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 AP002392.1-201ENST00000537692 208 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 AC098479.1-201ENST00000609225 154 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 AL591926.4-201ENST00000616895 298 ntBASIC1.9□□□□□ -2.11
VPS4AQ9UN37 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
VPS4AQ9UN37 MIR522-201ENST00000385071 87 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 RNU6-360P-201ENST00000390944 104 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 RNU6-1228P-201ENST00000391014 107 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 RN7SKP200-201ENST00000410564 320 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 AL445685.2-201ENST00000422551 342 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 FTH1P12-201ENST00000432137 551 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 MTND5P15-201ENST00000434246 349 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 HSPE1P9-201ENST00000440046 311 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.89□□□□□ -2.11
VPS4AQ9UN37 NDUFA4P2-201ENST00000489989 244 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 RNU2-56P-201ENST00000516826 190 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 AC245060.5-201ENST00000610778 3293 ntBASIC1.89□□□□□ -2.11
VPS4AQ9UN37 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
VPS4AQ9UN37 MIRLET7C-201ENST00000362160 84 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.75-201ENST00000362927 97 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 RNU6-1031P-201ENST00000384773 107 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 MT-TR-201ENST00000387439 65 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 PCNPP3-201ENST00000393579 471 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS4AQ9UN37 AC244636.1-201ENST00000421152 228 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 AC099513.1-201ENST00000490423 301 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 AC022559.1-201ENST00000520905 205 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 RPL23AP91-201ENST00000569211 455 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 MIR5089-201ENST00000580047 84 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 MIR4744-201ENST00000581563 82 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 U6.106-201ENST00000636360 105 ntBASIC1.88□□□□□ -2.11
VPS4AQ9UN37 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.240-201ENST00000364469 95 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 Y_RNA.555-201ENST00000384673 110 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 MT-TT-201ENST00000387460 66 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 RNU2-2P-201ENST00000410396 191 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 PIGPP3-201ENST00000425307 415 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 SNRPGP10-201ENST00000432323 225 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 RPL23AP6-201ENST00000446637 472 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 snoU13.27-201ENST00000459278 104 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.87□□□□□ -2.11
VPS4AQ9UN37 RNU2-4P-201ENST00000606190 192 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 SNORA28-201ENST00000606769 126 ntBASIC1.87□□□□□ -2.11
VPS4AQ9UN37 AC108706.1-201ENST00000611053 297 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms