Protein–RNA interactions for Protein: Q9NT62

ATG3, Ubiquitin-like-conjugating enzyme ATG3, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3Q9NT62 SNORD31B-201ENST00000364977 69 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 RNU6-1274P-201ENST00000384557 107 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 RNU6-220P-201ENST00000390919 107 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 MIR1289-2-201ENST00000408360 111 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 RNU6-592P-201ENST00000411333 103 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 COX6CP6-201ENST00000490840 228 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 AC097462.1-201ENST00000514125 324 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 RNU6-1149P-201ENST00000516810 97 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 SCARNA15-202ENST00000516881 127 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 MIR4662B-201ENST00000579498 81 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 AL137067.1-201ENST00000615933 120 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 U6.73-201ENST00000619194 103 ntBASIC3.19□□□□□ -1.9
ATG3Q9NT62 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
ATG3Q9NT62 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.18□□□□□ -1.9
ATG3Q9NT62 AL161431.1-201ENST00000618966 4205 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 MIR590-201ENST00000385008 97 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 MIR29B2-201ENST00000385055 81 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 MIR764-201ENST00000390811 85 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 AC007064.1-201ENST00000412238 351 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
ATG3Q9NT62 RN7SL297P-201ENST00000483161 293 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 MRPS17P9-201ENST00000511924 393 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 RNU6-948P-201ENST00000516374 107 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 RNU6-504P-201ENST00000516568 104 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 RNU6-1270P-201ENST00000517128 108 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 AL442128.1-201ENST00000615151 90 ntBASIC3.18□□□□□ -1.9
ATG3Q9NT62 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.18□□□□□ -1.9
ATG3Q9NT62 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
ATG3Q9NT62 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
ATG3Q9NT62 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.18□□□□□ -1.9
ATG3Q9NT62 AC007336.1-201ENST00000576365 3828 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 RNU6-1240P-201ENST00000365155 104 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 RNU6-1292P-201ENST00000383856 107 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 MT-TI-201ENST00000387365 69 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 AL117342.1-201ENST00000404861 406 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.17□□□□□ -1.9
ATG3Q9NT62 RNU6-638P-201ENST00000516582 104 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 RNU7-172P-201ENST00000517125 64 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 MIR4438-201ENST00000585271 93 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 AC103810.6-201ENST00000606708 136 ntBASIC3.17□□□□□ -1.9
ATG3Q9NT62 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.17□□□□□ -1.9
ATG3Q9NT62 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
ATG3Q9NT62 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
ATG3Q9NT62 RNA5SP456-201ENST00000364002 114 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 RNU6-1235P-201ENST00000384559 107 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 MIR548A2-201ENST00000384956 97 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 RNA5SP210-201ENST00000391034 120 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 SNORD77.3-201ENST00000391113 65 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 RNA5SP492-201ENST00000411330 114 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 EDDM3CP-201ENST00000415977 425 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 AL356320.1-201ENST00000429616 163 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 RNU6-498P-201ENST00000459468 107 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 Y_RNA.666-201ENST00000516187 112 ntBASIC3.16□□□□□ -1.9
ATG3Q9NT62 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ATG3Q9NT62 RNU1-72P-201ENST00000362976 153 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 Y_RNA.362-201ENST00000365518 110 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 AC011406.1-201ENST00000512440 370 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 RNU6-113P-201ENST00000516653 101 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.15□□□□□ -1.91
ATG3Q9NT62 MIR1273D-201ENST00000577266 86 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 MIR5092-201ENST00000583139 88 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.15□□□□□ -1.91
ATG3Q9NT62 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.15□□□□□ -1.91
ATG3Q9NT62 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
ATG3Q9NT62 AC016717.2-201ENST00000609089 5141 ntBASIC3.15□□□□□ -1.91
ATG3Q9NT62 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.15□□□□□ -1.91
ATG3Q9NT62 AL589743.1-201ENST00000551932 2712 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
ATG3Q9NT62 RNU6-888P-201ENST00000363010 101 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 AC104389.3-201ENST00000445629 235 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 snoU13.23-201ENST00000458863 104 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 RNU6-240P-201ENST00000516098 97 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 RNU6-970P-201ENST00000516312 107 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 RNU6-830P-201ENST00000516353 107 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 RNU6-126P-201ENST00000516685 103 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 RNU6-1096P-201ENST00000517089 102 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 AC004486.1-201ENST00000546846 233 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 JPX_2.1-201ENST00000614161 69 ntBASIC3.14□□□□□ -1.91
ATG3Q9NT62 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
ATG3Q9NT62 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
ATG3Q9NT62 Y_RNA.49-201ENST00000362714 112 ntBASIC3.13□□□□□ -1.91
ATG3Q9NT62 Y_RNA.544-201ENST00000384650 113 ntBASIC3.13□□□□□ -1.91
ATG3Q9NT62 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
ATG3Q9NT62 AC008134.1-201ENST00000420943 193 ntBASIC3.13□□□□□ -1.91
ATG3Q9NT62 RN7SKP12-201ENST00000516275 143 ntBASIC3.13□□□□□ -1.91
ATG3Q9NT62 MIR1248-201ENST00000629190 106 ntBASIC3.13□□□□□ -1.91
ATG3Q9NT62 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.13□□□□□ -1.91
ATG3Q9NT62 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.12□□□□□ -1.91
ATG3Q9NT62 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ATG3Q9NT62 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
ATG3Q9NT62 Y_RNA.198-201ENST00000364013 98 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 RNU6-1113P-201ENST00000384348 107 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.12□□□□□ -1.91
ATG3Q9NT62 HMGN2P18-201ENST00000450680 270 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 AC026436.1-201ENST00000510537 270 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 RNU6-826P-201ENST00000516827 104 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 MIR1291-201ENST00000627649 87 ntBASIC3.12□□□□□ -1.91
ATG3Q9NT62 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ATG3Q9NT62 HMGN2P3-201ENST00000433603 273 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms