Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RPL23AP91-201ENST00000569211 455 ntBASIC2.89□□□□□ -1.95
USP48Q86UV5 AC120024.3-201ENST00000603167 156 ntBASIC2.89□□□□□ -1.95
USP48Q86UV5 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.89□□□□□ -1.95
USP48Q86UV5 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.88□□□□□ -1.95
USP48Q86UV5 MIR21-201ENST00000362134 72 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 RNU6-978P-201ENST00000364371 103 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 RNU6-1019P-201ENST00000364424 107 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 RNU6-215P-201ENST00000365169 102 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 Y_RNA.353-201ENST00000365440 108 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 RNU6-597P-201ENST00000365620 102 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 MIR378D2-201ENST00000580636 98 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 AC078899.2-201ENST00000595282 212 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 MIR6873-201ENST00000622788 63 ntBASIC2.88□□□□□ -1.95
USP48Q86UV5 AC080100.1-201ENST00000624239 5356 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 RNA5SP456-201ENST00000364002 114 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 Y_RNA.796-201ENST00000364268 102 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 Y_RNA.799-201ENST00000364992 102 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 Y_RNA.521-201ENST00000384560 114 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 AC026436.1-201ENST00000510537 270 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 RNU6-659P-201ENST00000516454 104 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 MIR5094-201ENST00000578766 85 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 AL049861.1-201ENST00000603130 150 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 AC103810.6-201ENST00000606708 136 ntBASIC2.87□□□□□ -1.95
USP48Q86UV5 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USP48Q86UV5 RNU6-1209P-201ENST00000363655 107 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 RNU6-80P-201ENST00000384195 107 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 Y_RNA.525-201ENST00000384570 113 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 AC069257.2-201ENST00000441819 155 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.86□□□□□ -1.95
USP48Q86UV5 HMGN1P7-201ENST00000491722 313 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 Y_RNA.686-201ENST00000516548 134 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 RNU2-56P-201ENST00000516826 190 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 TUG1_4.1-201ENST00000619464 181 ntBASIC2.86□□□□□ -1.95
USP48Q86UV5 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USP48Q86UV5 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
USP48Q86UV5 SNORA3A-201ENST00000364113 130 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 RNU1-51P-201ENST00000365345 176 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 MIR539-201ENST00000365690 78 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
USP48Q86UV5 SNORA75.5-201ENST00000391291 81 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 SNORD11-201ENST00000459124 84 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 RNU4-57P-201ENST00000515980 135 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 RNU6-197P-201ENST00000516680 100 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 AC084364.2-201ENST00000546924 395 ntBASIC2.85□□□□□ -1.95
USP48Q86UV5 Y_RNA.4-201ENST00000362333 112 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 SNORA1B-201ENST00000362535 133 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 Y_RNA.253-201ENST00000364562 112 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 Y_RNA.273-201ENST00000364703 102 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 Y_RNA.338-201ENST00000365320 114 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
USP48Q86UV5 RNU2-55P-201ENST00000411146 174 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 AC245047.3-201ENST00000429428 127 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 AL049830.1-201ENST00000468034 425 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 AL160236.1-201ENST00000556317 195 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 MIR4446-201ENST00000578505 67 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 AC022217.4-201ENST00000604389 163 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 uc_338.4-201ENST00000616635 176 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 MIR1291-201ENST00000627649 87 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 FO624990.1-201ENST00000636373 85 ntBASIC2.84□□□□□ -1.95
USP48Q86UV5 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
USP48Q86UV5 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP48Q86UV5 SNORA67.1-201ENST00000364749 141 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 Y_RNA.294-201ENST00000364916 102 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.83□□□□□ -1.96
USP48Q86UV5 RNU7-107P-201ENST00000459121 61 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 SNORD77.4-201ENST00000516158 81 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 AP001328.1-201ENST00000528550 176 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 AC245884.12-201ENST00000615364 59 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP48Q86UV5 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.83□□□□□ -1.96
USP48Q86UV5 AC016717.2-201ENST00000609089 5141 ntBASIC2.83□□□□□ -1.96
USP48Q86UV5 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
USP48Q86UV5 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
USP48Q86UV5 Y_RNA.91-201ENST00000363042 107 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 Y_RNA.140-201ENST00000363474 103 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 SNORA48.1-201ENST00000390879 135 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 RNA5SP109-201ENST00000391010 116 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 SNORA79-201ENST00000408376 140 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 SNRPGP10-201ENST00000432323 225 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.82□□□□□ -1.96
USP48Q86UV5 AC011753.1-201ENST00000451001 220 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 MIR4529-201ENST00000578110 78 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 AC011603.4-201ENST00000611325 277 ntBASIC2.82□□□□□ -1.96
USP48Q86UV5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
USP48Q86UV5 RNU6-915P-201ENST00000364943 103 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 Y_RNA.432-201ENST00000384087 111 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 SNORA67.3-201ENST00000384366 140 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 SNORA64-201ENST00000384674 134 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 Y_RNA.563-201ENST00000384707 108 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
USP48Q86UV5 AC245047.4-201ENST00000433189 144 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 AL606517.2-201ENST00000442855 241 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.81□□□□□ -1.96
USP48Q86UV5 RPL23AP42-201ENST00000471152 471 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 RNU6-1299P-201ENST00000516316 100 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 Y_RNA.714-201ENST00000517065 90 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 SNORA31.25-201ENST00000517242 134 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 MIR5194-201ENST00000582634 120 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 AL359881.1-201ENST00000602916 267 ntBASIC2.81□□□□□ -1.96
USP48Q86UV5 AC097639.2-201ENST00000603159 172 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms