Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RPL23AP42-201ENST00000471152 471 ntBASIC2.17□□□□□ -2.06
VPS53Q5VIR6 RNU6-453P-201ENST00000516819 85 ntBASIC2.17□□□□□ -2.06
VPS53Q5VIR6 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.17□□□□□ -2.06
VPS53Q5VIR6 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNU4-41P-201ENST00000364426 143 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 MIR764-201ENST00000390811 85 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNU6-394P-201ENST00000410735 107 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNU2-40P-201ENST00000410833 196 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNU6-1135P-201ENST00000411083 103 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 AL163195.1-201ENST00000496941 348 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNA5SP182-201ENST00000516064 82 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNU6-295P-201ENST00000516901 104 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 AC109810.1-201ENST00000534066 224 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 MIR4713-201ENST00000582691 75 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 AL365434.2-201ENST00000607979 234 ntBASIC2.16□□□□□ -2.06
VPS53Q5VIR6 RNU5E-9P-201ENST00000411164 104 ntBASIC2.15□□□□□ -2.07
VPS53Q5VIR6 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.15□□□□□ -2.07
VPS53Q5VIR6 RNVU1-2-201ENST00000516326 135 ntBASIC2.15□□□□□ -2.07
VPS53Q5VIR6 RNU6-1007P-201ENST00000516586 107 ntBASIC2.15□□□□□ -2.07
VPS53Q5VIR6 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS53Q5VIR6 MIR4419B-201ENST00000577260 68 ntBASIC2.15□□□□□ -2.07
VPS53Q5VIR6 AC069114.2-201ENST00000604699 304 ntBASIC2.15□□□□□ -2.07
VPS53Q5VIR6 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
VPS53Q5VIR6 RNU6-1019P-201ENST00000364424 107 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 AL606845.1-201ENST00000404881 255 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 RNU6-255P-201ENST00000516957 105 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 AP002004.2-201ENST00000531656 154 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 AC022254.1-201ENST00000567857 235 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 MIR4431-201ENST00000579990 94 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 MIR8081-201ENST00000611533 95 ntBASIC2.14□□□□□ -2.07
VPS53Q5VIR6 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.796-201ENST00000364268 102 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 SNORD48-201ENST00000364953 64 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.799-201ENST00000364992 102 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 MT-TT-201ENST00000387460 66 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 MIR548M-201ENST00000408260 86 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 RNU4-43P-201ENST00000410628 137 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.13□□□□□ -2.07
VPS53Q5VIR6 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS53Q5VIR6 RNU6-1291P-201ENST00000516591 104 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.13□□□□□ -2.07
VPS53Q5VIR6 MIR3144-201ENST00000579460 79 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 AC084768.2-201ENST00000622736 221 ntBASIC2.13□□□□□ -2.07
VPS53Q5VIR6 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
VPS53Q5VIR6 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
VPS53Q5VIR6 RNU6-1209P-201ENST00000363655 107 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 RNU4-84P-201ENST00000364200 139 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.272-201ENST00000364696 102 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 RNU6-728P-201ENST00000365375 104 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.357-201ENST00000365487 109 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 RNU6-746P-201ENST00000384112 109 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.580-201ENST00000391004 95 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 RNU2-55P-201ENST00000411146 174 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 SEPT7P4-201ENST00000437076 306 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 AC069257.2-201ENST00000441819 155 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 AC023449.1-201ENST00000454464 154 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 SNORD11-201ENST00000459124 84 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.12□□□□□ -2.07
VPS53Q5VIR6 AC022217.4-201ENST00000604389 163 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 AC012493.3-201ENST00000604494 112 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.12□□□□□ -2.07
VPS53Q5VIR6 JPX_2.1-201ENST00000614161 69 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.12□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.267-201ENST00000364679 109 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 RNU6-1080P-201ENST00000383982 107 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 MIR15B-201ENST00000385045 98 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 RNA5SP100-201ENST00000410903 110 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 RNA5SP59-201ENST00000410922 110 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.621-201ENST00000411065 96 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC245047.4-201ENST00000433189 144 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AL121914.1-201ENST00000450188 156 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC233266.1-201ENST00000454518 96 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS53Q5VIR6 HMGN1P7-201ENST00000491722 313 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS53Q5VIR6 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 RNU6-548P-201ENST00000517083 115 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 SUB1P4-201ENST00000566062 339 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 RPL23AP91-201ENST00000569211 455 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC242852.1-201ENST00000612151 96 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC244015.1-201ENST00000622301 99 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 AC021753.1-201ENST00000635724 168 ntBASIC2.11□□□□□ -2.07
VPS53Q5VIR6 SNORA1B-201ENST00000362535 133 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.170-201ENST00000363746 110 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.253-201ENST00000364562 112 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 RNY1P5-201ENST00000383890 115 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 RNU6-804P-201ENST00000384286 107 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 Y_RNA.587-201ENST00000391210 103 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 AL591806.2-201ENST00000433122 173 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS53Q5VIR6 RPS27P1-201ENST00000450552 247 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 AC084364.2-201ENST00000546924 395 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 AC024614.2-201ENST00000577584 372 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS53Q5VIR6 MIR5094-201ENST00000578766 85 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 uc_338.4-201ENST00000616635 176 ntBASIC2.1□□□□□ -2.07
VPS53Q5VIR6 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms