Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MTATP6P29-201ENST00000415057 132 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.95□□□□□ -2.1
HOXA4Q00056 Y_RNA.666-201ENST00000516187 112 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 RNU6-365P-201ENST00000517113 106 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 AC091544.4-201ENST00000555268 342 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 MIR4662B-201ENST00000579498 81 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HOXA4Q00056 AC010297.1-201ENST00000623948 149 ntBASIC1.95□□□□□ -2.1
HOXA4Q00056 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HOXA4Q00056 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HOXA4Q00056 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HOXA4Q00056 Y_RNA.66-201ENST00000362862 102 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 VTRNA1-1-201ENST00000363120 99 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 Y_RNA.251-201ENST00000364551 99 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 SNORA4.2-201ENST00000365313 147 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 SNORA48.1-201ENST00000390879 135 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 RNU6-1154P-201ENST00000391001 104 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 SNORA75.5-201ENST00000391291 81 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 HMGN2P35-201ENST00000412164 270 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 HSPE1P9-201ENST00000440046 311 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXA4Q00056 RNU7-193P-201ENST00000516723 65 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 SUB1P4-201ENST00000566062 339 ntBASIC1.94□□□□□ -2.1
HOXA4Q00056 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXA4Q00056 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXA4Q00056 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
HOXA4Q00056 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXA4Q00056 RNU6-1084P-201ENST00000362498 107 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 RNU6-508P-201ENST00000363231 103 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 SNORA25.7-201ENST00000364375 127 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 RNA5SP126-201ENST00000365092 109 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 SNORD61-201ENST00000384252 73 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
HOXA4Q00056 STAG3L5P-204ENST00000443759 179 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 SNORA31.15-201ENST00000516771 132 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 Y_RNA.714-201ENST00000517065 90 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 SNORA31.25-201ENST00000517242 134 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 RNU6-1116P-201ENST00000517269 99 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 MIR548AI-201ENST00000579940 88 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 MIR4762-201ENST00000585261 75 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 AC131280.1-202ENST00000624067 4211 ntBASIC1.93□□□□□ -2.1
HOXA4Q00056 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXA4Q00056 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
HOXA4Q00056 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXA4Q00056 Y_RNA.71-201ENST00000362892 104 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 SNORA63D-201ENST00000364359 132 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 RNU6-1081P-201ENST00000384537 107 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 RNA5SP482-201ENST00000391269 118 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 SNORA26-201ENST00000391286 122 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 RNU4-53P-201ENST00000410828 140 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 AC007064.1-201ENST00000412238 351 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 AL158823.1-201ENST00000418441 478 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 RNU6-479P-201ENST00000516348 105 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 SNORD45.4-201ENST00000516629 73 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 RNU7-28P-201ENST00000516759 62 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 AC007751.1-201ENST00000529260 376 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 MIR4446-201ENST00000578505 67 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXA4Q00056 ICE2P2-201ENST00000483823 2787 ntBASIC1.92□□□□□ -2.1
HOXA4Q00056 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HOXA4Q00056 U8.5-201ENST00000364528 136 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU1-138P-201ENST00000384093 164 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 SNORA1-201ENST00000384107 130 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 SNORD20-201ENST00000384550 80 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 MIR221-201ENST00000385135 110 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 SNORA40-201ENST00000388090 126 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 SNORA3.2-201ENST00000408221 125 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNA5SP450-201ENST00000411206 102 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU7-107P-201ENST00000459121 61 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU6-1211P-201ENST00000459179 105 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU6-1333P-201ENST00000516162 93 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU6-313P-201ENST00000516317 112 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU6-504P-201ENST00000516568 104 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNU6-1270P-201ENST00000517128 108 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 RNA5SP437-201ENST00000517249 129 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 AC087685.1-201ENST00000587507 141 ntBASIC1.91□□□□□ -2.1
HOXA4Q00056 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
HOXA4Q00056 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.1
HOXA4Q00056 AC016717.2-201ENST00000609089 5141 ntBASIC1.9□□□□□ -2.1
HOXA4Q00056 MIRLET7C-201ENST00000362160 84 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 RNU6-112P-201ENST00000363599 104 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 RNU6-296P-201ENST00000384608 107 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
HOXA4Q00056 AL023284.1-201ENST00000403956 276 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 RNU6-693P-201ENST00000516134 107 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 RNU6-126P-201ENST00000516685 103 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 RNA5SP402-201ENST00000517148 110 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 AC090142.3-201ENST00000519012 385 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 SNORD53-201ENST00000579969 78 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 MIR5194-201ENST00000582634 120 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.9□□□□□ -2.11
HOXA4Q00056 MIR6766-201ENST00000622641 72 ntBASIC1.9□□□□□ -2.11
HOXA4Q00056 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
HOXA4Q00056 Y_RNA.81-201ENST00000362997 102 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 RNA5SP205-201ENST00000364653 136 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 Y_RNA.584-201ENST00000391090 114 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 RN7SKP200-201ENST00000410564 320 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 RNU2-7P-201ENST00000410794 178 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 Z98742.3-201ENST00000418637 326 ntBASIC1.89□□□□□ -2.11
HOXA4Q00056 CALM2P4-201ENST00000430810 426 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms