Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC105272.1-201ENST00000438604 198 ntBASIC2.6□□□□□ -1.99
RNF4P78317 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.6□□□□□ -1.99
RNF4P78317 AP004217.1-201ENST00000480579 346 ntBASIC2.6□□□□□ -1.99
RNF4P78317 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.6□□□□□ -1.99
RNF4P78317 AC114811.1-201ENST00000507207 168 ntBASIC2.6□□□□□ -1.99
RNF4P78317 PDCD5P2-201ENST00000507570 312 ntBASIC2.6□□□□□ -1.99
RNF4P78317 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.6□□□□□ -1.99
RNF4P78317 SNORA31.10-201ENST00000516482 106 ntBASIC2.6□□□□□ -1.99
RNF4P78317 RNU6-589P-201ENST00000516485 107 ntBASIC2.6□□□□□ -1.99
RNF4P78317 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
RNF4P78317 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
RNF4P78317 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
RNF4P78317 RNU6-163P-201ENST00000384396 106 ntBASIC2.59□□□□□ -1.99
RNF4P78317 MIR1263-201ENST00000408324 86 ntBASIC2.59□□□□□ -1.99
RNF4P78317 MIR1283-2-201ENST00000408621 87 ntBASIC2.59□□□□□ -1.99
RNF4P78317 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.59□□□□□ -1.99
RNF4P78317 SNORD36C-201ENST00000516733 66 ntBASIC2.59□□□□□ -1.99
RNF4P78317 RNU7-28P-201ENST00000516759 62 ntBASIC2.59□□□□□ -1.99
RNF4P78317 RNA5SP137-201ENST00000516833 135 ntBASIC2.59□□□□□ -1.99
RNF4P78317 GTF3AP2-201ENST00000557014 266 ntBASIC2.59□□□□□ -1.99
RNF4P78317 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.59□□□□□ -1.99
RNF4P78317 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.59□□□□□ -1.99
RNF4P78317 AC134878.1-201ENST00000619901 243 ntBASIC2.59□□□□□ -1.99
RNF4P78317 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.59□□□□□ -2
RNF4P78317 Y_RNA.37-201ENST00000362606 108 ntBASIC2.58□□□□□ -2
RNF4P78317 SNORD115-28-201ENST00000363931 81 ntBASIC2.58□□□□□ -2
RNF4P78317 SNORA2.2-201ENST00000365473 135 ntBASIC2.58□□□□□ -2
RNF4P78317 RNU6-1189P-201ENST00000383958 107 ntBASIC2.58□□□□□ -2
RNF4P78317 AL445646.1-201ENST00000431784 216 ntBASIC2.58□□□□□ -2
RNF4P78317 HMGN2P3-201ENST00000433603 273 ntBASIC2.58□□□□□ -2
RNF4P78317 HMGN2P5-201ENST00000436882 273 ntBASIC2.58□□□□□ -2
RNF4P78317 RN7SKP132-201ENST00000516001 208 ntBASIC2.58□□□□□ -2
RNF4P78317 RNVU1-2-201ENST00000516326 135 ntBASIC2.58□□□□□ -2
RNF4P78317 ZNF861P-201ENST00000588126 639 ntBASIC2.58□□□□□ -2
RNF4P78317 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.58□□□□□ -2
RNF4P78317 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
RNF4P78317 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
RNF4P78317 MTND5P18-201ENST00000445624 1801 ntBASIC2.57□□□□□ -2
RNF4P78317 MIR26A1-201ENST00000362205 77 ntBASIC2.57□□□□□ -2
RNF4P78317 Y_RNA.35-201ENST00000362601 101 ntBASIC2.57□□□□□ -2
RNF4P78317 SNORA4.2-201ENST00000365313 147 ntBASIC2.57□□□□□ -2
RNF4P78317 Y_RNA.366-201ENST00000365540 102 ntBASIC2.57□□□□□ -2
RNF4P78317 SNORA22-201ENST00000383907 134 ntBASIC2.57□□□□□ -2
RNF4P78317 SNORD116-21-201ENST00000384507 92 ntBASIC2.57□□□□□ -2
RNF4P78317 MIR518A2-201ENST00000384966 87 ntBASIC2.57□□□□□ -2
RNF4P78317 MIR548A1-201ENST00000385041 97 ntBASIC2.57□□□□□ -2
RNF4P78317 MIRLET7F2-201ENST00000385277 83 ntBASIC2.57□□□□□ -2
RNF4P78317 SNORD88.1-201ENST00000408684 91 ntBASIC2.57□□□□□ -2
RNF4P78317 AC007064.1-201ENST00000412238 351 ntBASIC2.57□□□□□ -2
RNF4P78317 AC004486.1-201ENST00000546846 233 ntBASIC2.57□□□□□ -2
RNF4P78317 AC079600.2-201ENST00000550076 130 ntBASIC2.57□□□□□ -2
RNF4P78317 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
RNF4P78317 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.57□□□□□ -2
RNF4P78317 SNORA5B-201ENST00000363786 132 ntBASIC2.56□□□□□ -2
RNF4P78317 Y_RNA.336-201ENST00000365307 109 ntBASIC2.56□□□□□ -2
RNF4P78317 MIR634-201ENST00000385208 97 ntBASIC2.56□□□□□ -2
RNF4P78317 AL138827.1-201ENST00000402666 306 ntBASIC2.56□□□□□ -2
RNF4P78317 CALM2P4-201ENST00000430810 426 ntBASIC2.56□□□□□ -2
RNF4P78317 RPS29P6-201ENST00000438196 145 ntBASIC2.56□□□□□ -2
RNF4P78317 HMGN2P32-201ENST00000444648 269 ntBASIC2.56□□□□□ -2
RNF4P78317 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.56□□□□□ -2
RNF4P78317 Y_RNA.649-201ENST00000459077 103 ntBASIC2.56□□□□□ -2
RNF4P78317 AC003982.1-202ENST00000469928 248 ntBASIC2.56□□□□□ -2
RNF4P78317 RNU6-240P-201ENST00000516098 97 ntBASIC2.56□□□□□ -2
RNF4P78317 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.56□□□□□ -2
RNF4P78317 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.56□□□□□ -2
RNF4P78317 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.56□□□□□ -2
RNF4P78317 MIRLET7C-201ENST00000362160 84 ntBASIC2.55□□□□□ -2
RNF4P78317 RNU1-112P-201ENST00000364401 164 ntBASIC2.55□□□□□ -2
RNF4P78317 Y_RNA.346-201ENST00000365385 112 ntBASIC2.55□□□□□ -2
RNF4P78317 Y_RNA.410-201ENST00000383992 113 ntBASIC2.55□□□□□ -2
RNF4P78317 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.55□□□□□ -2
RNF4P78317 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.55□□□□□ -2
RNF4P78317 SNORA28-201ENST00000606769 126 ntBASIC2.55□□□□□ -2
RNF4P78317 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
RNF4P78317 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.54□□□□□ -2
RNF4P78317 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.54□□□□□ -2
RNF4P78317 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.54□□□□□ -2
RNF4P78317 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.54□□□□□ -2
RNF4P78317 Y_RNA.528-201ENST00000384575 108 ntBASIC2.54□□□□□ -2
RNF4P78317 MIR9-1-201ENST00000385198 89 ntBASIC2.54□□□□□ -2
RNF4P78317 U8.16-201ENST00000391279 133 ntBASIC2.54□□□□□ -2
RNF4P78317 RNA5SP21-201ENST00000410917 96 ntBASIC2.54□□□□□ -2
RNF4P78317 RNU6-938P-201ENST00000411285 103 ntBASIC2.54□□□□□ -2
RNF4P78317 AC069257.2-201ENST00000441819 155 ntBASIC2.54□□□□□ -2
RNF4P78317 CYCTP-201ENST00000504253 315 ntBASIC2.54□□□□□ -2
RNF4P78317 RNA5SP356-201ENST00000515972 94 ntBASIC2.54□□□□□ -2
RNF4P78317 MIR3605-201ENST00000583214 100 ntBASIC2.54□□□□□ -2
RNF4P78317 AC002984.1-201ENST00000591692 448 ntBASIC2.54□□□□□ -2
RNF4P78317 AL137067.1-201ENST00000615933 120 ntBASIC2.54□□□□□ -2
RNF4P78317 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.54□□□□□ -2
RNF4P78317 AP006437.1-201ENST00000641440 3685 ntBASIC2.54□□□□□ -2
RNF4P78317 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
RNF4P78317 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
RNF4P78317 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
RNF4P78317 SNORA67.1-201ENST00000364749 141 ntBASIC2.53□□□□□ -2
RNF4P78317 RNA5SP465-201ENST00000391195 109 ntBASIC2.53□□□□□ -2
RNF4P78317 HMGN2P39-201ENST00000398005 273 ntBASIC2.53□□□□□ -2
RNF4P78317 AC063976.4-201ENST00000421971 163 ntBASIC2.53□□□□□ -2
RNF4P78317 SNORA9.3-201ENST00000516383 129 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 226.3 ms