Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR7-2-201ENST00000384970 110 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 SNORA67.5-201ENST00000391036 107 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 MIR548H3-201ENST00000408771 118 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 RN7SKP200-201ENST00000410564 320 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 Z98949.2-201ENST00000440996 144 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 RNU6-1023P-201ENST00000516137 106 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 AP002004.2-201ENST00000531656 154 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 AL162424.1-201ENST00000602325 221 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 AC095038.3-201ENST00000634439 195 ntBASIC1.73□□□□□ -2.13
HDAC4P56524 Y_RNA.54-201ENST00000362766 105 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 RNU6-899P-201ENST00000363947 107 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 SNORD27-201ENST00000363981 72 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 Y_RNA.224-201ENST00000364308 111 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 RNU4-41P-201ENST00000364426 143 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 SNORA36B-201ENST00000410438 131 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 AP1B1P2-201ENST00000416196 106 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 AC233266.1-201ENST00000454518 96 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 snoU13.9-201ENST00000458927 103 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 OR9P1P-201ENST00000496431 281 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.72□□□□□ -2.13
HDAC4P56524 SNORD116-28-201ENST00000516123 91 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 AL358944.1-201ENST00000528537 144 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 MIR5692C2-201ENST00000577959 77 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 AC242852.1-201ENST00000612151 96 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 AC244015.1-201ENST00000622301 99 ntBASIC1.72□□□□□ -2.13
HDAC4P56524 RNA5SP363-201ENST00000365072 115 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 RNU6-203P-201ENST00000384038 104 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 RNU6-1031P-201ENST00000384773 107 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 MT-TG-201ENST00000387429 68 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 RN7SKP51-201ENST00000410781 304 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.71□□□□□ -2.14
HDAC4P56524 AC005908.1-201ENST00000468701 347 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 RNU7-116P-201ENST00000516940 62 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 RNU6-111P-201ENST00000517179 105 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 SNORA28-201ENST00000606769 126 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 AC021506.2-201ENST00000612354 169 ntBASIC1.71□□□□□ -2.14
HDAC4P56524 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
HDAC4P56524 MIR126-201ENST00000362291 85 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 RNU4-10P-201ENST00000364383 140 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 Y_RNA.401-201ENST00000383965 117 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 MIR194-1-201ENST00000384892 85 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 AL034345.1-201ENST00000407768 123 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 MIR1278-201ENST00000408753 81 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 AL161935.2-201ENST00000414627 60 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 JTBP1-201ENST00000441314 247 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 STAG3L5P-204ENST00000443759 179 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 SNORD13-201ENST00000459299 104 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 RPL23AP54-201ENST00000495129 419 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.7□□□□□ -2.14
HDAC4P56524 AL591926.4-201ENST00000616895 298 ntBASIC1.7□□□□□ -2.14
HDAC4P56524 MIRLET7C-201ENST00000362160 84 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 RNU6-379P-201ENST00000363813 104 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 Y_RNA.188-201ENST00000363952 111 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 Y_RNA.253-201ENST00000364562 112 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 RNU6-338P-201ENST00000383888 105 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 Y_RNA.572-201ENST00000384757 98 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 RNU6-383P-201ENST00000410864 94 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.69□□□□□ -2.14
HDAC4P56524 RNU6-437P-201ENST00000459408 95 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 AL049830.1-201ENST00000468034 425 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 RNU7-28P-201ENST00000516759 62 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 SNORA77B-201ENST00000578179 125 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 AP000942.4-201ENST00000604811 241 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 MIR502-201ENST00000606349 86 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 BX284668.6-201ENST00000606899 438 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.69□□□□□ -2.14
HDAC4P56524 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
HDAC4P56524 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HDAC4P56524 RNU6-674P-201ENST00000363831 107 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 Y_RNA.203-201ENST00000364106 102 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 Y_RNA.265-201ENST00000364677 108 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 Y_RNA.478-201ENST00000384358 107 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 RNU4-62P-201ENST00000410125 130 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 Y_RNA.590-201ENST00000410140 107 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 Y_RNA.621-201ENST00000411065 96 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 RN7SKP101-201ENST00000411376 320 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 HSPE1P24-201ENST00000450782 238 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 RNU6-1271P-201ENST00000517049 105 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 AC100767.1-201ENST00000528178 123 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 AL442067.1-201ENST00000613261 223 ntBASIC1.68□□□□□ -2.14
HDAC4P56524 Y_RNA.65-201ENST00000362846 100 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 RNU6-653P-201ENST00000363074 106 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 RNU6-1205P-201ENST00000363625 106 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 RNY1-201ENST00000364228 113 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 SNORA20.1-201ENST00000364790 130 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 Y_RNA.292-201ENST00000364904 97 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 Y_RNA.304-201ENST00000365011 112 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 RNY4P28-201ENST00000365281 93 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 RNU6-969P-201ENST00000383900 105 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 RNA5SP482-201ENST00000391269 118 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 Y_RNA.618-201ENST00000410949 107 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.67□□□□□ -2.14
HDAC4P56524 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.67□□□□□ -2.14
HDAC4P56524 DNAJC19P9-201ENST00000555084 351 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 AC006006.1-201ENST00000603082 144 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 AC073349.3-201ENST00000617616 186 ntBASIC1.67□□□□□ -2.14
HDAC4P56524 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
HDAC4P56524 RNU6-1209P-201ENST00000363655 107 ntBASIC1.66□□□□□ -2.14
HDAC4P56524 RNU6-144P-201ENST00000383951 107 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 238.5 ms