Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 RNU2-13P-201ENST00000515909 113 ntBASIC-0.57□□□□□ -2.5
NUP98P52948 RNU6-1114P-201ENST00000516022 107 ntBASIC-0.57□□□□□ -2.5
NUP98P52948 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-0.57□□□□□ -2.5
NUP98P52948 AP002371.2-201ENST00000624450 503 ntBASIC-0.57□□□□□ -2.5
NUP98P52948 AC099654.12-201ENST00000639868 649 ntBASIC-0.57□□□□□ -2.5
NUP98P52948 SNORA69-201ENST00000383895 132 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 RNU6-128P-201ENST00000383976 107 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 RNU6-1310P-201ENST00000384153 107 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 RNU6-602P-201ENST00000411155 105 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-0.58□□□□□ -2.5
NUP98P52948 AC090844.1-201ENST00000422019 156 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.58□□□□□ -2.5
NUP98P52948 RNA5SP401-201ENST00000515920 127 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 AC005972.2-201ENST00000604690 348 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 MIR8055-201ENST00000610739 97 ntBASIC-0.58□□□□□ -2.5
NUP98P52948 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 SNORD37.1-201ENST00000390968 65 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.59□□□□□ -2.5
NUP98P52948 MTCO1P5-201ENST00000433573 344 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 UBE2V1P7-201ENST00000446395 340 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 AC087499.4-201ENST00000448505 178 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 RNU6-1208P-201ENST00000459588 107 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 AC114755.3-201ENST00000481111 251 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 AC026782.1-201ENST00000512952 449 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 AC090617.3-201ENST00000573670 475 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.59□□□□□ -2.5
NUP98P52948 SNORD113-7-201ENST00000363762 77 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 RNU6-740P-201ENST00000364734 105 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 RNU7-125P-201ENST00000458760 62 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 Y_RNA.706-201ENST00000516933 99 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 MIR4263-201ENST00000584745 83 ntBASIC-0.59□□□□□ -2.5
NUP98P52948 RNU6-254P-201ENST00000363377 107 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 MIR1257-201ENST00000408490 117 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 USP9YP16-201ENST00000430287 407 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 USP9YP23-201ENST00000455085 407 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-0.6□□□□□ -2.51
NUP98P52948 AC006600.1-201ENST00000572529 153 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.6□□□□□ -2.51
NUP98P52948 MIR6828-201ENST00000636181 60 ntBASIC-0.6□□□□□ -2.51
NUP98P52948 FGF7P2-201ENST00000332473 296 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 RNA5SP118-201ENST00000410385 109 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 MTCO1P20-201ENST00000425366 358 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 EIF1P2-201ENST00000428233 350 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 MTND3P21-201ENST00000433774 331 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 RNU2-60P-201ENST00000517290 128 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 AC092954.2-201ENST00000609103 430 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 AC019193.3-201ENST00000609144 554 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 JPX_2.1-201ENST00000614161 69 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 ZNF299P-201ENST00000406845 1804 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.61□□□□□ -2.51
NUP98P52948 SNORD14E-201ENST00000364009 85 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 RNU6-38P-201ENST00000384085 107 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 RNU6-297P-201ENST00000384636 107 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 SNORA26-201ENST00000391286 122 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 RNU6-284P-201ENST00000411105 106 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.61□□□□□ -2.51
NUP98P52948 SNRPGP14-201ENST00000435400 219 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 MRPS36P3-201ENST00000519284 130 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 MIR7107-201ENST00000611489 80 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 MIR3674-201ENST00000636576 68 ntBASIC-0.61□□□□□ -2.51
NUP98P52948 RNU4-21P-201ENST00000362802 126 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 Y_RNA.242-201ENST00000364473 110 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 SNORA24-201ENST00000384096 131 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 RNU6-767P-201ENST00000384132 107 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 RNU6-187P-201ENST00000384139 106 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 MIR620-201ENST00000385232 95 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 MT-TF-201ENST00000387314 71 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 MTCO2P27-201ENST00000420740 428 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 RNU6-261P-201ENST00000459506 102 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 SNORA31.14-201ENST00000516728 116 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 AL118558.2-201ENST00000556294 238 ntBASIC-0.62□□□□□ -2.51
NUP98P52948 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.63□□□□□ -2.51
NUP98P52948 MTATP6P13-201ENST00000438531 667 ntBASIC-0.63□□□□□ -2.51
NUP98P52948 MTND1P11-201ENST00000456661 876 ntBASIC-0.63□□□□□ -2.51
NUP98P52948 RNU6-625P-201ENST00000459412 107 ntBASIC-0.63□□□□□ -2.51
NUP98P52948 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.63□□□□□ -2.51
NUP98P52948 MIR4273-201ENST00000582824 84 ntBASIC-0.63□□□□□ -2.51
NUP98P52948 5S_rRNA.15-201ENST00000611169 127 ntBASIC-0.63□□□□□ -2.51
NUP98P52948 Y_RNA.381-201ENST00000365666 102 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.64□□□□□ -2.51
NUP98P52948 RNU6-958P-201ENST00000516995 106 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 MTND1P24-201ENST00000552175 861 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.64□□□□□ -2.51
NUP98P52948 MIR5188-201ENST00000583467 113 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 MIR548AD-201ENST00000584780 82 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 AL670379.3-201ENST00000605040 251 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 RNU6-89P-201ENST00000606519 100 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 uc_338.28-201ENST00000612082 187 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 AC006441.5-201ENST00000612680 209 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 AC079248.2-201ENST00000623779 326 ntBASIC-0.64□□□□□ -2.51
NUP98P52948 AP000720.1-201ENST00000625091 483 ntBASIC-0.64□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms