Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU2-4P-201ENST00000606190 192 ntBASIC2.16□□□□□ -2.06
SMARCA1P28370 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
SMARCA1P28370 Y_RNA.7-201ENST00000362352 102 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 Y_RNA.233-201ENST00000364407 101 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 Y_RNA.253-201ENST00000364562 112 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 MIR616-201ENST00000385293 97 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 MT-TT-201ENST00000387460 66 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 RN7SKP101-201ENST00000411376 320 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 HMGN2P19-201ENST00000425149 265 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 PIGPP3-201ENST00000425307 415 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.15□□□□□ -2.07
SMARCA1P28370 RNA5SP458-201ENST00000516188 119 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 AC022254.1-201ENST00000567857 235 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 RPL23AP91-201ENST00000569211 455 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 MIR4713-201ENST00000582691 75 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 AL021707.8-201ENST00000609428 183 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 AL591926.4-201ENST00000616895 298 ntBASIC2.15□□□□□ -2.07
SMARCA1P28370 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
SMARCA1P28370 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SMARCA1P28370 RNU6-682P-201ENST00000363843 106 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 SUMO2P12-201ENST00000405924 140 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 RN7SKP51-201ENST00000410781 304 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 RN7SKP164-201ENST00000516138 266 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 RNU6-1219P-201ENST00000516143 112 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 RNU2-56P-201ENST00000516826 190 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 RNU6-295P-201ENST00000516901 104 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 MIR3935-201ENST00000583472 104 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 AC072026.1-201ENST00000605023 201 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 FTX_2.1-201ENST00000618816 94 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.14□□□□□ -2.07
SMARCA1P28370 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
SMARCA1P28370 RNA5SP99-201ENST00000364020 114 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 MIR583-201ENST00000384846 75 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
SMARCA1P28370 RNA5SP496-201ENST00000391240 109 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 AL445685.2-201ENST00000422551 342 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 HMGN1P7-201ENST00000491722 313 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 RNU6-861P-201ENST00000516745 106 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 RNA5SP364-201ENST00000516938 78 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 MIR4255-201ENST00000579351 72 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 MIR2681-201ENST00000581814 105 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 AL353997.5-201ENST00000618886 171 ntBASIC2.13□□□□□ -2.07
SMARCA1P28370 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.13□□□□□ -2.07
SMARCA1P28370 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
SMARCA1P28370 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
SMARCA1P28370 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SMARCA1P28370 MIR126-201ENST00000362291 85 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 Y_RNA.121-201ENST00000363309 113 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 RNU2-7P-201ENST00000410794 178 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.12□□□□□ -2.07
SMARCA1P28370 STAG3L5P-204ENST00000443759 179 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 SNORD11-201ENST00000459124 84 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 NDUFA4P2-201ENST00000489989 244 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.12□□□□□ -2.07
SMARCA1P28370 MIR4744-201ENST00000581563 82 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 AC098479.1-201ENST00000609225 154 ntBASIC2.12□□□□□ -2.07
SMARCA1P28370 Y_RNA.150-201ENST00000363562 102 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 Y_RNA.265-201ENST00000364677 108 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 RNU4-70P-201ENST00000384579 139 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 MIR522-201ENST00000385071 87 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 MIR9-3-201ENST00000385084 90 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 SNRPGP10-201ENST00000432323 225 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 OR9P1P-201ENST00000496431 281 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 RNU6-561P-201ENST00000516222 102 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 RNU6-1007P-201ENST00000516586 107 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 SNORA31.17-201ENST00000516953 127 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.11□□□□□ -2.07
SMARCA1P28370 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.11□□□□□ -2.07
SMARCA1P28370 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.11□□□□□ -2.07
SMARCA1P28370 AL049861.1-201ENST00000603130 150 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 AC012493.3-201ENST00000604494 112 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 AL391903.3-201ENST00000612158 163 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 MIR6845-201ENST00000613182 61 ntBASIC2.11□□□□□ -2.07
SMARCA1P28370 RNU6-103P-201ENST00000363686 107 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 Y_RNA.182-201ENST00000363880 111 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 Y_RNA.412-201ENST00000384001 104 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 RNU6-578P-201ENST00000390980 103 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 SNORA40.18-201ENST00000391200 128 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 Y_RNA.587-201ENST00000391210 103 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 RNA5SP482-201ENST00000391269 118 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 AL606845.1-201ENST00000404881 255 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 RNA5SP489-201ENST00000410986 109 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 MLLT10P1-201ENST00000418346 262 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.1□□□□□ -2.07
SMARCA1P28370 AC074198.2-201ENST00000508153 258 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 U6.106-201ENST00000636360 105 ntBASIC2.1□□□□□ -2.07
SMARCA1P28370 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SMARCA1P28370 SNORD68-201ENST00000363214 84 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 SNORA16.1-201ENST00000364597 132 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 Y_RNA.338-201ENST00000365320 114 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 RNU6-886P-201ENST00000384319 105 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 PCNPP3-201ENST00000393579 471 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 MIR548I3-201ENST00000408378 149 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 MIR548I1-201ENST00000408810 149 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 RN7SKP200-201ENST00000410564 320 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.09□□□□□ -2.07
SMARCA1P28370 RPS29P11-201ENST00000496507 171 ntBASIC2.09□□□□□ -2.07
SMARCA1P28370 RNU7-28P-201ENST00000516759 62 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 132.2 ms