Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC022217.4-201ENST00000604389 163 ntBASIC1.7□□□□□ -2.14
LMX1BO60663 AC018630.2-201ENST00000534866 2403 ntBASIC1.7□□□□□ -2.14
LMX1BO60663 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
LMX1BO60663 RNU4-41P-201ENST00000364426 143 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 SNORD116-18-201ENST00000383961 92 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 RNU6-484P-201ENST00000384016 107 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 RNY3P5-201ENST00000384127 102 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 MIR562-201ENST00000384894 95 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 MIR15B-201ENST00000385045 98 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
LMX1BO60663 NDUFA4P2-201ENST00000489989 244 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 RNU6-1291P-201ENST00000516591 104 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 RNU6-341P-201ENST00000516973 96 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 AC026271.5-201ENST00000577873 130 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 MIR4448-201ENST00000584360 86 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 AL031274.2-201ENST00000599419 203 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 AL049861.1-201ENST00000603130 150 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 SNORD14A-201ENST00000606526 91 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 MIR3658-201ENST00000636291 56 ntBASIC1.69□□□□□ -2.14
LMX1BO60663 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
LMX1BO60663 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
LMX1BO60663 ZNF355P-201ENST00000427301 3216 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 RNU6-23P-201ENST00000363283 107 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 RNY1P11-201ENST00000363759 113 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 SNORD45.3-201ENST00000363836 72 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 SNORA3A-201ENST00000364113 130 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 MIR597-201ENST00000384968 97 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 MIR520G-201ENST00000385064 90 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 SNORA40.18-201ENST00000391200 128 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 Y_RNA.587-201ENST00000391210 103 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 HMGN2P39-201ENST00000398005 273 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 Y_RNA.622-201ENST00000411091 108 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 CYCSP49-201ENST00000420810 319 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.68□□□□□ -2.14
LMX1BO60663 AL445685.2-201ENST00000422551 342 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 RNU6-1053P-201ENST00000515930 101 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 SNORD116-25-201ENST00000516517 92 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 RNU1-142P-201ENST00000516682 145 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 AC024995.1-201ENST00000523014 93 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 RPL23AP91-201ENST00000569211 455 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.68□□□□□ -2.14
LMX1BO60663 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.68□□□□□ -2.14
LMX1BO60663 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.68□□□□□ -2.14
LMX1BO60663 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
LMX1BO60663 ZNF702P-202ENST00000434269 1966 ntBASIC1.68□□□□□ -2.14
LMX1BO60663 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
LMX1BO60663 Y_RNA.253-201ENST00000364562 112 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 SNORD50.2-201ENST00000365465 70 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 Y_RNA.357-201ENST00000365487 109 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 RNU6-449P-201ENST00000383914 107 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 RNU6-643P-201ENST00000384018 107 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 SNORA8-201ENST00000384574 139 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 MIR518A2-201ENST00000384966 87 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 MIR29C-201ENST00000385231 88 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 RNU6-131P-201ENST00000391144 107 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 SUMO2P12-201ENST00000405924 140 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 RNU2-40P-201ENST00000410833 196 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 AC245047.4-201ENST00000433189 144 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 AL121914.1-201ENST00000450188 156 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 SNORD77.4-201ENST00000516158 81 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 MIR3126-201ENST00000577443 74 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 AC005786.1-201ENST00000588553 154 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 uc_338.4-201ENST00000616635 176 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 AL359851.1-201ENST00000569460 4997 ntBASIC1.67□□□□□ -2.14
LMX1BO60663 SNORA1B-201ENST00000362535 133 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 RNU6-704P-201ENST00000364162 103 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 RNU6-728P-201ENST00000365375 104 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 Y_RNA.400-201ENST00000383963 111 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 MIR17-201ENST00000385012 84 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
LMX1BO60663 SNORA12.1-201ENST00000390873 148 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 RNA5SP489-201ENST00000410986 109 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 AL356379.1-201ENST00000414105 126 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 AL358944.1-201ENST00000528537 144 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 MIR4498-201ENST00000577599 66 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.66□□□□□ -2.14
LMX1BO60663 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.66□□□□□ -2.14
LMX1BO60663 AC078899.2-201ENST00000595282 212 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 Y_RNA.778-201ENST00000620203 90 ntBASIC1.66□□□□□ -2.14
LMX1BO60663 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
LMX1BO60663 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
LMX1BO60663 RNU6-151P-201ENST00000364158 107 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 Y_RNA.215-201ENST00000364204 112 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 Y_RNA.267-201ENST00000364679 109 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 SNORD113-1-201ENST00000365321 69 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RNU6-768P-201ENST00000384683 107 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 MIR515-2-201ENST00000384883 83 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 MIR515-1-201ENST00000384884 83 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 MIR569-201ENST00000385228 96 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 MIR613-201ENST00000385248 95 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RNA5SP109-201ENST00000391010 116 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AL512604.1-201ENST00000404812 257 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RNU2-55P-201ENST00000411146 174 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AC006461.1-201ENST00000412637 326 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.65□□□□□ -2.15
LMX1BO60663 AC233266.1-201ENST00000454518 96 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RNU7-197P-201ENST00000458836 62 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RNA5SP233-201ENST00000459153 113 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RN7SL274P-201ENST00000492268 272 ntBASIC1.65□□□□□ -2.15
LMX1BO60663 RNVU1-2-201ENST00000516326 135 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms