Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC012531.5-201ENST00000611375 151 ntBASIC3.78□□□□□ -1.8
VPS9D1Q9Y2B5 AC244205.2-202ENST00000635781 342 ntBASIC3.78□□□□□ -1.8
VPS9D1Q9Y2B5 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
VPS9D1Q9Y2B5 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS9D1Q9Y2B5 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS9D1Q9Y2B5 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA63.2-201ENST00000362603 126 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 Y_RNA.370-201ENST00000365589 108 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 RNA5SP424-201ENST00000390988 115 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 HSPE1P26-201ENST00000405341 275 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 RPS29P29-201ENST00000456396 171 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 AL031183.1-201ENST00000457667 207 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 CKS1BP2-201ENST00000497342 240 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 MIR4286-201ENST00000580651 93 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 FAM106DP-201ENST00000586416 501 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 TNPO1P3-201ENST00000436471 2662 ntBASIC3.77□□□□□ -1.81
VPS9D1Q9Y2B5 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 AL359837.1-201ENST00000381357 287 ntBASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 RNU2-48P-201ENST00000410694 191 ntBASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-70P-201ENST00000516438 60 ntBASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 RNU7-35P-201ENST00000517174 62 ntBASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 AL020996.3-201ENST00000606617 222 ntBASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 OTUD4P1-201ENST00000237841 3067 ntBASIC3.76□□□□□ -1.81
VPS9D1Q9Y2B5 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 MIR423-201ENST00000362201 94 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 RNU1-18P-201ENST00000363062 164 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-342P-201ENST00000384521 104 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA2B-201ENST00000384583 137 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 MIR218-1-201ENST00000384999 110 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 FO393413.1-201ENST00000402892 195 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 STAG3L5P-204ENST00000443759 179 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 CYP2C59P-201ENST00000457790 269 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 SNORD4B-201ENST00000459083 72 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 RN7SL323P-201ENST00000494712 295 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 Y_RNA.681-201ENST00000516445 113 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 SCARNA11.3-201ENST00000517276 130 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA62.6-201ENST00000606322 83 ntBASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS9D1Q9Y2B5 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 MIRLET7C-201ENST00000362160 84 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 MIR23B-201ENST00000384832 97 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 MIR95-201ENST00000385072 81 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 AL159169.1-201ENST00000421119 127 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 MICF-203ENST00000432679 129 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 U3.44-201ENST00000458938 192 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 RN7SL542P-201ENST00000467147 294 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 Y_RNA.660-201ENST00000516002 120 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-687P-201ENST00000516443 89 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 RN7SKP83-201ENST00000516512 178 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 AC022695.1-201ENST00000522089 237 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 MIR6875-201ENST00000617506 72 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.74□□□□□ -1.81
VPS9D1Q9Y2B5 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA25.9-201ENST00000365087 128 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA24-201ENST00000384096 131 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 Z98941.1-201ENST00000407764 100 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-447P-201ENST00000410293 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-1118P-201ENST00000410382 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-1076P-201ENST00000410397 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-355P-201ENST00000410427 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-791P-201ENST00000410467 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-705P-201ENST00000410601 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-1100P-201ENST00000410691 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-860P-201ENST00000410860 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-1217P-201ENST00000411276 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU6-785P-201ENST00000411324 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA71B-202ENST00000439232 272 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RPS29P7-201ENST00000439662 171 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 AC245047.7-201ENST00000440265 293 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 AL606517.2-201ENST00000442855 241 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 RNU7-73P-201ENST00000458743 63 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 SNORD67.1-201ENST00000516618 108 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 AC023632.4-201ENST00000517783 191 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 MIR4429-201ENST00000580105 73 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 SNORA28-201ENST00000606769 126 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 MIR92B-201ENST00000607575 96 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 U6.90-201ENST00000614007 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 U6.70-201ENST00000620287 104 ntBASIC3.73□□□□□ -1.81
VPS9D1Q9Y2B5 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms