Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 MIR3162-201ENST00000581818 82 ntBASIC3.31□□□□□ -1.88
NOD1Q9Y239 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.31□□□□□ -1.88
NOD1Q9Y239 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.31□□□□□ -1.88
NOD1Q9Y239 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
NOD1Q9Y239 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.3□□□□□ -1.88
NOD1Q9Y239 RNA5SP126-201ENST00000365092 109 ntBASIC3.3□□□□□ -1.88
NOD1Q9Y239 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
NOD1Q9Y239 AC104389.3-201ENST00000445629 235 ntBASIC3.3□□□□□ -1.88
NOD1Q9Y239 HMGN1P18-201ENST00000457642 277 ntBASIC3.3□□□□□ -1.88
NOD1Q9Y239 COX6CP6-201ENST00000490840 228 ntBASIC3.3□□□□□ -1.88
NOD1Q9Y239 RPS26P48-201ENST00000491713 339 ntBASIC3.3□□□□□ -1.88
NOD1Q9Y239 MIR3124-201ENST00000582636 67 ntBASIC3.3□□□□□ -1.88
NOD1Q9Y239 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.3□□□□□ -1.88
NOD1Q9Y239 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.29□□□□□ -1.88
NOD1Q9Y239 Y_RNA.37-201ENST00000362606 108 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 Y_RNA.281-201ENST00000364774 94 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 Y_RNA.336-201ENST00000365307 109 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 SNORA80E-201ENST00000384744 137 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 MIR184-201ENST00000384962 84 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 RNA5SP109-201ENST00000391010 116 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 UBBP3-201ENST00000445497 241 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 RNU7-28P-201ENST00000516759 62 ntBASIC3.29□□□□□ -1.88
NOD1Q9Y239 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.29□□□□□ -1.88
NOD1Q9Y239 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
NOD1Q9Y239 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NOD1Q9Y239 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.28□□□□□ -1.88
NOD1Q9Y239 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
NOD1Q9Y239 RNU6-32P-201ENST00000383948 107 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 RNU6-13P-201ENST00000384248 107 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 RNU6-12P-201ENST00000384604 107 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 RNU6-41P-201ENST00000384741 107 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 RPL21P3-201ENST00000395517 478 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 AL445646.1-201ENST00000431784 216 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 AC087499.2-201ENST00000432861 149 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 RNU7-70P-201ENST00000516941 66 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 SCARNA20.6-201ENST00000517251 106 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 AC022513.1-201ENST00000624512 117 ntBASIC3.28□□□□□ -1.88
NOD1Q9Y239 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.28□□□□□ -1.88
NOD1Q9Y239 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NOD1Q9Y239 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
NOD1Q9Y239 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
NOD1Q9Y239 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
NOD1Q9Y239 RNU6-1107P-201ENST00000364817 104 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 RNU6-690P-201ENST00000365242 106 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 Y_RNA.495-201ENST00000384435 112 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 RPL32P35-201ENST00000415214 394 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 RN7SKP132-201ENST00000516001 208 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 SNORD36C-201ENST00000516733 66 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NOD1Q9Y239 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
NOD1Q9Y239 AL355596.1-201ENST00000565399 3996 ntBASIC3.27□□□□□ -1.89
NOD1Q9Y239 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
NOD1Q9Y239 SNORA9.2-201ENST00000365361 133 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 RNU6-106P-201ENST00000384405 107 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 SNORD12C-201ENST00000386307 89 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.26□□□□□ -1.89
NOD1Q9Y239 MIR4435-1-201ENST00000582552 80 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.26□□□□□ -1.89
NOD1Q9Y239 AC022202.1-201ENST00000613515 211 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 AC015726.2-201ENST00000620112 122 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 ZNF720P1-201ENST00000562403 1939 ntBASIC3.26□□□□□ -1.89
NOD1Q9Y239 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.25□□□□□ -1.89
NOD1Q9Y239 Y_RNA.85-201ENST00000363014 111 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 RNU6-440P-201ENST00000390882 105 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.25□□□□□ -1.89
NOD1Q9Y239 STAG3L5P-204ENST00000443759 179 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 HMGN2P32-201ENST00000444648 269 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 RNA5SP217-201ENST00000515959 91 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 AC005786.1-201ENST00000588553 154 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 MIR8054-201ENST00000620877 86 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 AC073476.4-201ENST00000628409 72 ntBASIC3.25□□□□□ -1.89
NOD1Q9Y239 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NOD1Q9Y239 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NOD1Q9Y239 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NOD1Q9Y239 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.24□□□□□ -1.89
NOD1Q9Y239 AC073325.2-201ENST00000339545 159 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 RNU1-58P-201ENST00000362413 163 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 Y_RNA.549-201ENST00000384657 102 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 MIR196B-201ENST00000384852 84 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 RNU6-554P-201ENST00000410466 106 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.24□□□□□ -1.89
NOD1Q9Y239 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.24□□□□□ -1.89
NOD1Q9Y239 RNU6-56P-201ENST00000516986 93 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 AP003484.1-201ENST00000530974 250 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.24□□□□□ -1.89
NOD1Q9Y239 AL035425.3-201ENST00000564206 4996 ntBASIC3.24□□□□□ -1.89
NOD1Q9Y239 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
NOD1Q9Y239 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.23□□□□□ -1.89
NOD1Q9Y239 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
NOD1Q9Y239 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
NOD1Q9Y239 AC062016.1-201ENST00000355719 319 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 RNU6-349P-201ENST00000362402 107 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 RNU1-91P-201ENST00000364746 163 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 Y_RNA.440-201ENST00000384120 114 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 MIR29C-201ENST00000385231 88 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.23□□□□□ -1.89
NOD1Q9Y239 AL590004.2-201ENST00000404787 371 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 RNA5SP274-201ENST00000410484 108 ntBASIC3.23□□□□□ -1.89
NOD1Q9Y239 RNU6-938P-201ENST00000411285 103 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 183.8 ms