Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Y_RNA.418-201ENST00000384029 102 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.527-201ENST00000384573 102 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 RNU6-939P-201ENST00000384634 107 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.602-201ENST00000410535 92 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 AC024067.1-201ENST00000426199 223 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 CYCTP-201ENST00000504253 315 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 AC114811.1-201ENST00000507207 168 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 AC090821.2-201ENST00000523552 176 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 AC090049.2-201ENST00000550377 109 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 AC019288.1-201ENST00000557918 224 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 MIR6078-201ENST00000611069 100 ntBASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
CPSF3Q9UKF6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 RNU6-833P-201ENST00000363486 107 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.380-201ENST00000365663 111 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 SNORA70.7-201ENST00000384159 133 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 RNU6-1105P-201ENST00000384774 107 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 MIR526A1-201ENST00000384897 85 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 MIR522-201ENST00000385071 87 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 AC104332.1-201ENST00000440471 797 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 RNU6-496P-201ENST00000516145 99 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 RNU6-1153P-201ENST00000516760 105 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 RN7SKP88-201ENST00000516847 250 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 RNU6-1137P-201ENST00000517073 99 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 AC024405.2-202ENST00000532731 184 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 AC113195.1-201ENST00000579952 141 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 POLR3GP1-201ENST00000594073 261 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 AL356055.1-201ENST00000602528 446 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 AP003357.1-201ENST00000604497 148 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 7SK.8-201ENST00000612110 250 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 7SK.11-201ENST00000615477 250 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 7SK.13-201ENST00000622040 250 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 AC027279.3-201ENST00000625055 122 ntBASIC1.28□□□□□ -2.2
CPSF3Q9UKF6 U8.7-201ENST00000364940 136 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 SNORA2.2-201ENST00000365473 135 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.455-201ENST00000384230 98 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 RNU6-163P-201ENST00000384396 106 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 MIR891A-201ENST00000401237 79 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 RNU2-14P-201ENST00000411053 191 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 ELOCP20-201ENST00000422460 345 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 AC015922.2-201ENST00000435593 184 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 AC117454.1-201ENST00000491120 168 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 HMGN1P7-201ENST00000491722 313 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 RNU7-115P-201ENST00000516433 55 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 AC131281.1-201ENST00000522984 164 ntBASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.27□□□□□ -2.21
CPSF3Q9UKF6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 RNU6-1048P-201ENST00000364054 107 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.214-201ENST00000364201 112 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 RNU6-191P-201ENST00000516295 94 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 RNU7-116P-201ENST00000516940 62 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 AC127455.1-201ENST00000565496 145 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 GHRLOS.1-201ENST00000610995 70 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 MIR548AY-201ENST00000617669 107 ntBASIC1.26□□□□□ -2.21
CPSF3Q9UKF6 RNA5SP327-201ENST00000362494 101 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.26-201ENST00000362539 101 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 RNY1P10-201ENST00000363268 113 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 RNU6-801P-201ENST00000364087 105 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 RNU6-806P-201ENST00000365147 105 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 AC117470.1-201ENST00000381974 330 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.581-201ENST00000391017 97 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 AL451046.2-201ENST00000403074 277 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 MLLT10P1-201ENST00000418346 262 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 LINC01399-202ENST00000458450 244 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 AC098869.1-201ENST00000481627 292 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 AL355297.3-201ENST00000604082 446 ntBASIC1.25□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.4-201ENST00000362333 112 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 RNU4-90P-201ENST00000362773 141 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.136-201ENST00000363444 102 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.153-201ENST00000363615 91 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.202-201ENST00000364083 110 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.210-201ENST00000364161 110 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 SNORA72.4-201ENST00000384174 132 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 SNORA26.5-201ENST00000391215 123 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 SNRPGP10-201ENST00000432323 225 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 RNU7-141P-201ENST00000459304 62 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 RPL23AP54-201ENST00000495129 419 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 SNORA40.15-201ENST00000516884 107 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 AC136628.3-201ENST00000521868 290 ntBASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.24□□□□□ -2.21
CPSF3Q9UKF6 snoU2_19.2-201ENST00000363024 80 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 RNU6-770P-201ENST00000363929 105 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.203-201ENST00000364106 102 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 Y_RNA.276-201ENST00000364732 109 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 SNORA33.2-201ENST00000365413 134 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 RNU6-1227P-201ENST00000383981 107 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 MIR215-201ENST00000384858 110 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 RPL21P38-201ENST00000418090 167 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 U8.19-201ENST00000459095 133 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 RNU6-322P-201ENST00000516010 103 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 RNU6-764P-201ENST00000516396 105 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 MIR4781-201ENST00000585250 76 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 FAM106DP-201ENST00000586416 501 ntBASIC1.23□□□□□ -2.21
CPSF3Q9UKF6 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.23□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 169.8 ms