Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 MIR126-201ENST00000362291 85 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.91-201ENST00000363042 107 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.140-201ENST00000363474 103 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.291-201ENST00000364886 113 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.420-201ENST00000384043 110 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-959P-201ENST00000384671 107 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 MLLT10P1-201ENST00000418346 262 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 AC245047.4-201ENST00000433189 144 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 RPS12P2-201ENST00000439728 269 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 NDUFA4P2-201ENST00000489989 244 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 AC090142.3-201ENST00000519012 385 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
NKX2-4Q9H2Z4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-1081P-201ENST00000384537 107 ntBASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 AC069114.2-201ENST00000604699 304 ntBASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 AL591926.4-201ENST00000616895 298 ntBASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 AC022513.1-201ENST00000624512 117 ntBASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
NKX2-4Q9H2Z4 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-978P-201ENST00000364371 103 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-1082P-201ENST00000364574 107 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RNU11-3P-201ENST00000391111 133 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 MTND4LP9-201ENST00000427694 174 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 AC245047.3-201ENST00000429428 127 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RNU7-197P-201ENST00000458836 62 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 AC092991.1-201ENST00000477176 376 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RN7SL297P-201ENST00000483161 293 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 MRPS17P9-201ENST00000511924 393 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-62P-201ENST00000516526 102 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-365P-201ENST00000517113 106 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 AC097639.2-201ENST00000603159 172 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 AC103810.6-201ENST00000606708 136 ntBASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NKX2-4Q9H2Z4 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.242-201ENST00000364473 110 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.486-201ENST00000384398 107 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 RNA5SP344-201ENST00000411081 104 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 CYCSP49-201ENST00000420810 319 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 AP004217.1-201ENST00000480579 346 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 RN7SL499P-201ENST00000481141 276 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 AC087685.1-201ENST00000587507 141 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 AC022217.4-201ENST00000604389 163 ntBASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
NKX2-4Q9H2Z4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 SNORD68-201ENST00000363214 84 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-1019P-201ENST00000364424 107 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 MIR597-201ENST00000384968 97 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 MIR802-201ENST00000390235 94 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-460P-201ENST00000391158 108 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 RNA5SP492-201ENST00000411330 114 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 RPL23AP42-201ENST00000471152 471 ntBASIC2.59□□□□□ -1.99
NKX2-4Q9H2Z4 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 Y_RNA.226-201ENST00000364337 114 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 RNU6-1336P-201ENST00000383886 109 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 Y_RNA.542-201ENST00000384641 111 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 RNA5SP210-201ENST00000391034 120 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 Y_RNA.584-201ENST00000391090 114 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 AC026436.1-201ENST00000510537 270 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 MIR5094-201ENST00000578766 85 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 AC008507.4-201ENST00000585464 127 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 TUG1_4.1-201ENST00000619464 181 ntBASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
NKX2-4Q9H2Z4 Y_RNA.265-201ENST00000364677 108 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 MIR539-201ENST00000365690 78 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 RNU6-22P-201ENST00000384355 107 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 MIR522-201ENST00000385071 87 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 SNORD72-201ENST00000390994 80 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 RNA5SP109-201ENST00000391010 116 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 FTH1P12-201ENST00000432137 551 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 AC069257.2-201ENST00000441819 155 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 AL606517.2-201ENST00000442855 241 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 RNU6-504P-201ENST00000516568 104 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 RNU6-971P-201ENST00000516920 106 ntBASIC2.57□□□□□ -2
NKX2-4Q9H2Z4 AP001328.1-201ENST00000528550 176 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 210.3 ms