Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 SNORA36B-201ENST00000410438 131 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 RPL23AP7-203ENST00000449021 469 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 SNORD65B-201ENST00000459126 73 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 AC092991.1-201ENST00000477176 376 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 RNU7-115P-201ENST00000516433 55 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 AC245884.12-201ENST00000615364 59 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 MIR548AY-201ENST00000617669 107 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 TUG1_4.1-201ENST00000619464 181 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 MIR203B-201ENST00000636080 86 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 AC068647.2-201ENST00000637380 353 ntBASIC2.46□□□□□ -2.02
LRFN3Q9BTN0 SNORD114-6-201ENST00000364393 72 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 RNU6-728P-201ENST00000365375 104 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 RNU6-44P-201ENST00000384045 107 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 RNU6-80P-201ENST00000384195 107 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 SNORA20B-201ENST00000384220 132 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 RNU6-768P-201ENST00000384683 107 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 MIR518A2-201ENST00000384966 87 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 SNORD88.1-201ENST00000408684 91 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 RNU6-1337P-201ENST00000516525 95 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 Y_RNA.686-201ENST00000516548 134 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 MIR3646-201ENST00000578301 84 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 MIR6845-201ENST00000613182 61 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 U2.20-201ENST00000613956 192 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 MIR6844-201ENST00000637122 62 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 ZNF271P-202ENST00000465539 1970 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 CENPCP1-201ENST00000533085 2578 ntBASIC2.45□□□□□ -2.02
LRFN3Q9BTN0 snoU2-30.2-201ENST00000362805 70 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 RNY1P11-201ENST00000363759 113 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 SNORA67.1-201ENST00000364749 141 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 SNORA67.3-201ENST00000384366 140 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 SNORD116-13-201ENST00000384408 92 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 RNU11-3P-201ENST00000391111 133 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 BTF3P4-201ENST00000418852 495 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 AL035461.1-201ENST00000421490 332 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 AC060773.1-201ENST00000421698 310 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 RPS27P1-201ENST00000450552 247 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 HSPE1P13-201ENST00000451143 297 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 AP004217.1-201ENST00000480579 346 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 RNU4-57P-201ENST00000515980 135 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 RNU6-919P-201ENST00000516731 104 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 MIR3169-201ENST00000578032 83 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 MIR5194-201ENST00000582634 120 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 AP003357.1-201ENST00000604497 148 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 AC011603.4-201ENST00000611325 277 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 MIR6733-201ENST00000635723 61 ntBASIC2.44□□□□□ -2.02
LRFN3Q9BTN0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 SNORA27.1-201ENST00000362604 124 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 SNORA3A-201ENST00000364113 130 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 Y_RNA.393-201ENST00000383936 102 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 RNY3P5-201ENST00000384127 102 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 Y_RNA.521-201ENST00000384560 114 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 MIR1278-201ENST00000408753 81 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 RNU6-588P-201ENST00000410281 105 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 RNU4-43P-201ENST00000410628 137 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 AC018634.1-201ENST00000437554 401 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 HMGN2P34-201ENST00000437647 269 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 RNA5SP76-201ENST00000516277 87 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 AC127455.1-201ENST00000565496 145 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 AP001340.1-201ENST00000624405 217 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 MIR219B-201ENST00000637023 88 ntBASIC2.43□□□□□ -2.02
LRFN3Q9BTN0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 Y_RNA.251-201ENST00000364551 99 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 RNU6-1325P-201ENST00000364905 105 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 RNU1-51P-201ENST00000365345 176 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 RNU6-1323P-201ENST00000384025 107 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 AC016909.1-201ENST00000415916 166 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 BX510359.4-201ENST00000423750 193 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 CST2P1-201ENST00000425770 87 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 RPS26P55-201ENST00000471178 356 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 RNU6-1041P-201ENST00000516254 102 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 POLR3GP1-201ENST00000594073 261 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 U1.36-201ENST00000620684 176 ntBASIC2.42□□□□□ -2.02
LRFN3Q9BTN0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 Y_RNA.374-201ENST00000365606 101 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 Y_RNA.622-201ENST00000411091 108 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 SNRPGP8-201ENST00000454064 226 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 RNU6-659P-201ENST00000516454 104 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 RNU2-56P-201ENST00000516826 190 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 SNORA31.25-201ENST00000517242 134 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 AP001328.1-201ENST00000528550 176 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 MIR3605-201ENST00000583214 100 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 MIR6779-201ENST00000617283 64 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.41□□□□□ -2.02
LRFN3Q9BTN0 SNORD45.3-201ENST00000363836 72 ntBASIC2.4□□□□□ -2.03
LRFN3Q9BTN0 RNU6-1082P-201ENST00000364574 107 ntBASIC2.4□□□□□ -2.03
LRFN3Q9BTN0 MIR181B1-201ENST00000385240 110 ntBASIC2.4□□□□□ -2.03
LRFN3Q9BTN0 SNORA75.5-201ENST00000391291 81 ntBASIC2.4□□□□□ -2.03
LRFN3Q9BTN0 RPS27P22-201ENST00000478056 241 ntBASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 183.7 ms