Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RNU2-35P-201ENST00000516446 142 ntBASIC3.48□□□□□ -1.85
TRERF1Q96PN7 HSPE1P19-201ENST00000603327 295 ntBASIC3.48□□□□□ -1.85
TRERF1Q96PN7 U2.20-201ENST00000613956 192 ntBASIC3.48□□□□□ -1.85
TRERF1Q96PN7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.48□□□□□ -1.85
TRERF1Q96PN7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RNU6-1189P-201ENST00000383958 107 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RNY1P6-201ENST00000384193 109 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RNU6-1186P-201ENST00000410429 97 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RNU2-34P-201ENST00000516534 121 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RNU7-6P-201ENST00000516845 62 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 RNU7-128P-201ENST00000517247 62 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 MIR6733-201ENST00000635723 61 ntBASIC3.47□□□□□ -1.85
TRERF1Q96PN7 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
TRERF1Q96PN7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TRERF1Q96PN7 MIR126-201ENST00000362291 85 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 SNORA4.2-201ENST00000365313 147 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 RNU6-242P-201ENST00000384359 107 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.531-201ENST00000384589 121 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 SNORA11.2-201ENST00000408318 127 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 MIR1912-201ENST00000410389 80 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.601-201ENST00000410500 113 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 AL139132.1-201ENST00000431587 344 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.46□□□□□ -1.86
TRERF1Q96PN7 AC113410.1-201ENST00000505029 247 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC3.46□□□□□ -1.86
TRERF1Q96PN7 RNU7-25P-201ENST00000516544 62 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 SNORD36C-201ENST00000516733 66 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 SNORD59.2-201ENST00000516873 68 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 RNA5SP490-201ENST00000517141 136 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 MIR4305-201ENST00000583252 102 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 AC002984.1-201ENST00000591692 448 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 MIR7515-201ENST00000637837 67 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 AL161431.1-201ENST00000618966 4205 ntBASIC3.46□□□□□ -1.86
TRERF1Q96PN7 ZNF271P-202ENST00000465539 1970 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.45□□□□□ -1.86
TRERF1Q96PN7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.45□□□□□ -1.86
TRERF1Q96PN7 AC108206.1-201ENST00000570186 4159 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 SNORA5B-201ENST00000363786 132 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 RNU1-96P-201ENST00000364163 162 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.313-201ENST00000365095 103 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.410-201ENST00000383992 113 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 RNU6-279P-201ENST00000391297 101 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 MIR1289-1-201ENST00000408836 144 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 RNA5SP344-201ENST00000411081 104 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 RPS12P18-201ENST00000442381 270 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.45□□□□□ -1.86
TRERF1Q96PN7 AC091826.1-201ENST00000514065 313 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC3.45□□□□□ -1.86
TRERF1Q96PN7 MIR3199-1-201ENST00000582434 88 ntBASIC3.45□□□□□ -1.86
TRERF1Q96PN7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
TRERF1Q96PN7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
TRERF1Q96PN7 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
TRERF1Q96PN7 AC073325.2-201ENST00000339545 159 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 U8.9-201ENST00000365667 134 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 MIR1253-201ENST00000408273 105 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 HMGN2P34-201ENST00000437647 269 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 RNA5SP112-201ENST00000515937 99 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 RNU6-267P-201ENST00000516714 103 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
TRERF1Q96PN7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
TRERF1Q96PN7 MIR1255B1-201ENST00000636325 63 ntBASIC3.44□□□□□ -1.86
TRERF1Q96PN7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
TRERF1Q96PN7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
TRERF1Q96PN7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
TRERF1Q96PN7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.43□□□□□ -1.86
TRERF1Q96PN7 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
TRERF1Q96PN7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.37-201ENST00000362606 108 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNU6-170P-201ENST00000362832 104 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.267-201ENST00000364679 109 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNU1-133P-201ENST00000364867 167 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNU6-1296P-201ENST00000383879 107 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNU6-675P-201ENST00000384236 104 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.500-201ENST00000384466 111 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNU6-402P-201ENST00000410678 103 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNU6-938P-201ENST00000411285 103 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 BTF3P4-201ENST00000418852 495 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 AC060773.1-201ENST00000421698 310 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 AC004941.2-201ENST00000427009 228 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 UBE2DNL-203ENST00000474922 222 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 AC006483.1-201ENST00000487308 313 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RN7SL20P-201ENST00000488827 297 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 RNA5SP217-201ENST00000515959 91 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.43□□□□□ -1.86
TRERF1Q96PN7 AC087741.2-201ENST00000619415 172 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 AC007318.2-201ENST00000620999 243 ntBASIC3.43□□□□□ -1.86
TRERF1Q96PN7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
TRERF1Q96PN7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
TRERF1Q96PN7 MIR340-201ENST00000362125 95 ntBASIC3.42□□□□□ -1.86
TRERF1Q96PN7 RNU4-16P-201ENST00000364737 141 ntBASIC3.42□□□□□ -1.86
TRERF1Q96PN7 RNU6-979P-201ENST00000383896 107 ntBASIC3.42□□□□□ -1.86
TRERF1Q96PN7 RNU6-1083P-201ENST00000384022 107 ntBASIC3.42□□□□□ -1.86
TRERF1Q96PN7 Y_RNA.440-201ENST00000384120 114 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms