Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RNU1-51P-201ENST00000365345 176 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 RNU6-42P-201ENST00000384165 107 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 SNORA48.3-201ENST00000391081 134 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 COX6CP10-201ENST00000416832 224 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 AL445685.2-201ENST00000422551 342 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 SNORA31.25-201ENST00000517242 134 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 AC091178.2-201ENST00000584401 117 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 AC072026.1-201ENST00000605023 201 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 AC245884.12-201ENST00000615364 59 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 U1.36-201ENST00000620684 176 ntBASIC2.48□□□□□ -2.01
SMC1BQ8NDV3 AC131280.1-202ENST00000624067 4211 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 Y_RNA.7-201ENST00000362352 102 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 Y_RNA.24-201ENST00000362508 103 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 RNA5SP325-201ENST00000363756 130 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 RNU4-10P-201ENST00000364383 140 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 Y_RNA.267-201ENST00000364679 109 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 RNU7-120P-201ENST00000459334 63 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 RN7SKP164-201ENST00000516138 266 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 SNORA25.15-201ENST00000516487 89 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 RNU6-1291P-201ENST00000516591 104 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 MIR2681-201ENST00000581814 105 ntBASIC2.47□□□□□ -2.01
SMC1BQ8NDV3 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.01
SMC1BQ8NDV3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.46□□□□□ -2.01
SMC1BQ8NDV3 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 MIR21-201ENST00000362134 72 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 RNU6-47P-201ENST00000383866 107 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 RNU6-969P-201ENST00000383900 105 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.435-201ENST00000384095 112 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 SNORA48.1-201ENST00000390879 135 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 AL512604.1-201ENST00000404812 257 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 AL358944.1-201ENST00000528537 144 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 AC084364.2-201ENST00000546924 395 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 MIR4308-201ENST00000580634 81 ntBASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.46□□□□□ -2.02
SMC1BQ8NDV3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 RNU6-103P-201ENST00000363686 107 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.203-201ENST00000364106 102 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 RNU4-41P-201ENST00000364426 143 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.270-201ENST00000364693 104 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 RNU4-70P-201ENST00000384579 139 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 RNU6-918P-201ENST00000391219 106 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 RNU6-383P-201ENST00000410864 94 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 MTND2P29-201ENST00000438595 412 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 RNU2-56P-201ENST00000516826 190 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 AP002004.2-201ENST00000531656 154 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 AL929325.1-201ENST00000603096 117 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.783-201ENST00000613546 102 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 MIR203B-201ENST00000636080 86 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 AC068700.1-201ENST00000565862 3754 ntBASIC2.45□□□□□ -2.02
SMC1BQ8NDV3 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.121-201ENST00000363309 113 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.233-201ENST00000364407 101 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.571-201ENST00000384753 98 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 MT-TR-201ENST00000387439 65 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 RNA5SP496-201ENST00000391240 109 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 RNU6-381P-201ENST00000391259 108 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 RNA5SP501-201ENST00000410990 112 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 AC023449.1-201ENST00000454464 154 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 AC107393.1-201ENST00000512403 346 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 RNVU1-2-201ENST00000516326 135 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 DNAJC19P9-201ENST00000555084 351 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 JPX_2.1-201ENST00000614161 69 ntBASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
SMC1BQ8NDV3 MIRLET7G-201ENST00000362280 84 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 RNA5SP450-201ENST00000411206 102 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 AC245047.3-201ENST00000429428 127 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 AC079804.2-201ENST00000490376 200 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 AC002984.1-201ENST00000591692 448 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 MIR6840-201ENST00000611937 71 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 FTX_2.1-201ENST00000618816 94 ntBASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.43□□□□□ -2.02
SMC1BQ8NDV3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 RNU6-1080P-201ENST00000383982 107 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 MIR616-201ENST00000385293 97 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 SNORA67.5-201ENST00000391036 107 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 SNORD23.1-201ENST00000408212 104 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 RNU2-7P-201ENST00000410794 178 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 AC245047.4-201ENST00000433189 144 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 RNU2-19P-201ENST00000517288 84 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 RNU2-4P-201ENST00000606190 192 ntBASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
SMC1BQ8NDV3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 AL596028.1-201ENST00000326971 197 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 SNORD114-26-201ENST00000363543 72 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 Y_RNA.229-201ENST00000364347 113 ntBASIC2.41□□□□□ -2.02
SMC1BQ8NDV3 RNA5SP37-201ENST00000365420 130 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 354.3 ms