Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
NPAS3Q8IXF0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 MIR422A-201ENST00000362286 90 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 SNORA1B-201ENST00000362535 133 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 RNU6-1244P-201ENST00000363614 108 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 AC107083.1-201ENST00000439643 279 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 HMGN2P18-201ENST00000450680 270 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 SCARNA3-201ENST00000517097 143 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 MIR3609-201ENST00000582661 80 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 U2.20-201ENST00000613956 192 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 AL442644.1-201ENST00000454390 3105 ntBASIC3.44□□□□□ -1.86
NPAS3Q8IXF0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 snoU2-30.1-201ENST00000365012 70 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.494-201ENST00000384432 111 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.510-201ENST00000384511 114 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 RNA5SP467-201ENST00000391274 118 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 AC097463.2-201ENST00000421074 142 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 COTL1P1-201ENST00000422309 375 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 AL135938.1-201ENST00000443141 297 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 AL357552.1-201ENST00000445254 415 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 RNU7-99P-201ENST00000516271 62 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 RNU2-34P-201ENST00000516534 121 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 RNU6-341P-201ENST00000516973 96 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 AC022149.2-201ENST00000621061 203 ntBASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
NPAS3Q8IXF0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.500-201ENST00000384466 111 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 Y_RNA.567-201ENST00000384736 106 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 MIR1289-1-201ENST00000408836 144 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 RPS29P28-201ENST00000446439 141 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 RN7SL863P-201ENST00000462370 296 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 UBE2DNL-203ENST00000474922 222 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 RPL23AP94-201ENST00000512518 302 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 RNU6-998P-201ENST00000515894 101 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 SNORD45.4-201ENST00000516629 73 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 RNU7-128P-201ENST00000517247 62 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 AL513043.2-201ENST00000573941 143 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 MIR4513-201ENST00000581077 86 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 AC020891.4-201ENST00000605745 93 ntBASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.42□□□□□ -1.86
NPAS3Q8IXF0 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 SNORD38.1-201ENST00000363863 68 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 SNORA80A-201ENST00000363922 136 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 RNU6-649P-201ENST00000384463 107 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 SNORA40.18-201ENST00000391200 128 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 AL109933.2-201ENST00000452651 260 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 SNORA4.4-201ENST00000515921 135 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 SNORA70.19-201ENST00000516717 90 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 RNA5SP468-201ENST00000516782 93 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 AC103810.6-201ENST00000606708 136 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 PWAR6-201ENST00000552334 4618 ntBASIC3.41□□□□□ -1.86
NPAS3Q8IXF0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
NPAS3Q8IXF0 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.4□□□□□ -1.86
NPAS3Q8IXF0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
NPAS3Q8IXF0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 RNU1-70P-201ENST00000362618 164 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 MIR34C-201ENST00000384831 77 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 AC060773.1-201ENST00000421698 310 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 AL445685.2-201ENST00000422551 342 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 RNU7-34P-201ENST00000459394 64 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 AP000873.1-201ENST00000463987 400 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 RNU6-448P-201ENST00000517052 107 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 MIR4484-201ENST00000582855 83 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 AC012531.5-201ENST00000611375 151 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 MIR1248-201ENST00000629190 106 ntBASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
NPAS3Q8IXF0 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 SNORA44-201ENST00000384584 132 ntBASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 SNORA80E-201ENST00000384744 137 ntBASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 RNU6-1307P-201ENST00000391012 103 ntBASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 RNU2-59P-201ENST00000410482 191 ntBASIC3.39□□□□□ -1.87
NPAS3Q8IXF0 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms