Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-1209P-201ENST00000363655 107 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 Y_RNA.265-201ENST00000364677 108 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 COX6CP10-201ENST00000416832 224 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HOXA1P49639 RNU7-94P-201ENST00000459576 63 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 RNU6-970P-201ENST00000516312 107 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 AP002004.2-201ENST00000531656 154 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 CBX3P4-201ENST00000538909 354 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 AL773524.1-201ENST00000614065 229 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 Y_RNA.802-201ENST00000614892 130 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.57□□□□□ -2.16
HOXA1P49639 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
HOXA1P49639 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
HOXA1P49639 MIR449A-201ENST00000362113 91 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 Y_RNA.796-201ENST00000364268 102 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 Y_RNA.262-201ENST00000364641 102 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 Y_RNA.799-201ENST00000364992 102 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 SNORA8.3-201ENST00000384679 139 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 MIR626-201ENST00000385032 94 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.57□□□□□ -2.16
HOXA1P49639 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.57□□□□□ -2.16
HOXA1P49639 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.57□□□□□ -2.16
HOXA1P49639 IGKV3-31-201ENST00000523109 329 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 MIR4724-201ENST00000579485 89 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 AL049861.1-201ENST00000603130 150 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.57□□□□□ -2.16
HOXA1P49639 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
HOXA1P49639 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXA1P49639 MIR126-201ENST00000362291 85 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 Y_RNA.229-201ENST00000364347 113 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 RNU6-200P-201ENST00000364743 107 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 RNU6-203P-201ENST00000384038 104 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HOXA1P49639 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 RNU2-2P-201ENST00000410396 191 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXA1P49639 AC244636.1-201ENST00000421152 228 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 CALM2P4-201ENST00000430810 426 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 snoU13.27-201ENST00000459278 104 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXA1P49639 RNU2-4P-201ENST00000606190 192 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 AC021506.2-201ENST00000612354 169 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.56□□□□□ -2.16
HOXA1P49639 AC095038.3-201ENST00000634439 195 ntBASIC1.56□□□□□ -2.16
HOXA1P49639 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.55□□□□□ -2.16
HOXA1P49639 RNU6-674P-201ENST00000363831 107 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 RNU4-17P-201ENST00000365598 141 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 RNU6-144P-201ENST00000383951 107 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 RNU6-1031P-201ENST00000384773 107 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 RNU6-907P-201ENST00000390924 102 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 RNU6-381P-201ENST00000391259 108 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 AC009310.1-201ENST00000414414 451 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 SNRPGP10-201ENST00000432323 225 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 AC069257.2-201ENST00000441819 155 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 NDUFA4P2-201ENST00000489989 244 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 AC099513.1-201ENST00000490423 301 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 HMGN1P7-201ENST00000491722 313 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 OR9P1P-201ENST00000496431 281 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 AC107393.1-201ENST00000512403 346 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 RNU6-794P-201ENST00000517261 64 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 MIR4709-201ENST00000577272 72 ntBASIC1.55□□□□□ -2.16
HOXA1P49639 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
HOXA1P49639 MIR526A2-201ENST00000390198 65 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
HOXA1P49639 RNU6-918P-201ENST00000391219 106 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 U8.16-201ENST00000391279 133 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 AC019129.1-201ENST00000403786 261 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 RN7SKP51-201ENST00000410781 304 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 PIGPP3-201ENST00000425307 415 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 RPL23AP6-201ENST00000446637 472 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 Y_RNA.644-201ENST00000459006 113 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 SNORD11-201ENST00000459124 84 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.54□□□□□ -2.16
HOXA1P49639 RNU6-561P-201ENST00000516222 102 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 Y_RNA.674-201ENST00000516362 113 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 RNU6-1007P-201ENST00000516586 107 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.54□□□□□ -2.16
HOXA1P49639 MIR5089-201ENST00000580047 84 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 MIR4285-201ENST00000581001 85 ntBASIC1.54□□□□□ -2.16
HOXA1P49639 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.54□□□□□ -2.16
HOXA1P49639 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
HOXA1P49639 RNA5SP363-201ENST00000365072 115 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 SNORA64-201ENST00000384674 134 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 MIR522-201ENST00000385071 87 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 Y_RNA.587-201ENST00000391210 103 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 RN7SKP200-201ENST00000410564 320 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 RNU6-847P-201ENST00000411115 108 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 Z98742.3-201ENST00000418637 326 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 AC093850.1-201ENST00000454121 251 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 RNU1-98P-201ENST00000458992 160 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 COX6CP14-201ENST00000469580 174 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.53□□□□□ -2.16
HOXA1P49639 RNA5SP168-201ENST00000516642 112 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
HOXA1P49639 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXA1P49639 AC022254.1-201ENST00000567857 235 ntBASIC1.53□□□□□ -2.16
HOXA1P49639 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 172.1 ms