Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SNORA80E-201ENST00000384744 137 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 RNA5SP424-201ENST00000390988 115 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 MIR1261-201ENST00000408659 82 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 RHEBP3-201ENST00000411920 351 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.09□□□□□ -1.91
COL8A1P27658 U3.44-201ENST00000458938 192 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 RNU7-94P-201ENST00000459576 63 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 RNU6-965P-201ENST00000516721 96 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 RNU6-1258P-201ENST00000516911 111 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 IGKV2-26-201ENST00000518305 343 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 U6.108-201ENST00000637764 58 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 AP000553.6-201ENST00000641242 118 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL8A1P27658 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
COL8A1P27658 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
COL8A1P27658 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
COL8A1P27658 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.08□□□□□ -1.92
COL8A1P27658 SNORD38.1-201ENST00000363863 68 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 Y_RNA.247-201ENST00000364500 92 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 Y_RNA.332-201ENST00000365271 113 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL8A1P27658 RNA5SP467-201ENST00000391274 118 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 AL445685.2-201ENST00000422551 342 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 RNU1-142P-201ENST00000516682 145 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 RNA5SP33-201ENST00000516687 98 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.08□□□□□ -1.92
COL8A1P27658 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.08□□□□□ -1.92
COL8A1P27658 MIR5004-201ENST00000579078 107 ntBASIC3.08□□□□□ -1.92
COL8A1P27658 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
COL8A1P27658 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.08□□□□□ -1.92
COL8A1P27658 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL8A1P27658 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.07□□□□□ -1.92
COL8A1P27658 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.07□□□□□ -1.92
COL8A1P27658 RNU6-1094P-201ENST00000362416 104 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 Y_RNA.241-201ENST00000364470 117 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 Y_RNA.340-201ENST00000365330 92 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 Y_RNA.470-201ENST00000384307 117 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 SNORA44-201ENST00000384584 132 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 RPL31P63-201ENST00000422565 375 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 AL135938.1-201ENST00000443141 297 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.07□□□□□ -1.92
COL8A1P27658 U6.98-201ENST00000637157 84 ntBASIC3.07□□□□□ -1.92
COL8A1P27658 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL8A1P27658 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL8A1P27658 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.07□□□□□ -1.92
COL8A1P27658 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL8A1P27658 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
COL8A1P27658 SNORD115-34-201ENST00000362441 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-12-201ENST00000362583 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-29-201ENST00000362834 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-9-201ENST00000362912 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-21-201ENST00000362963 81 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RNU1-18P-201ENST00000363062 164 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-14-201ENST00000363090 81 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-41-201ENST00000363608 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RNU6-1244P-201ENST00000363614 108 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-11-201ENST00000363616 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-5-201ENST00000363633 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-39-201ENST00000363694 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-4-201ENST00000363810 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-6-201ENST00000363942 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-42-201ENST00000364273 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-15-201ENST00000364809 81 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-26-201ENST00000365067 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-10-201ENST00000365073 81 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-43-201ENST00000365503 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 SNORD115-36-201ENST00000365629 82 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.06□□□□□ -1.92
COL8A1P27658 RNU6-1319P-201ENST00000390855 104 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RNU6-747P-201ENST00000390928 104 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RNU6-129P-201ENST00000391022 107 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RNU6-241P-201ENST00000391148 104 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
COL8A1P27658 RNU2-37P-201ENST00000410695 177 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RNU6-177P-201ENST00000411257 104 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 ARF4P2-201ENST00000430209 526 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.06□□□□□ -1.92
COL8A1P27658 UBL5P1-201ENST00000507979 193 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 RPPH1-2P-201ENST00000516688 293 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.06□□□□□ -1.92
COL8A1P27658 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL8A1P27658 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.06□□□□□ -1.92
COL8A1P27658 AC244205.2-202ENST00000635781 342 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.06□□□□□ -1.92
COL8A1P27658 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.06□□□□□ -1.92
COL8A1P27658 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL8A1P27658 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms