| YY1 | P25490 | AC055731.1-201 | ENST00000474387 | 401 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | LINC02514-201 | ENST00000509058 | 498 nt | TSL 3 BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | AC107393.1-201 | ENST00000512403 | 346 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | SCARNA24.2-201 | ENST00000516968 | 130 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | AC016885.2-201 | ENST00000522598 | 261 nt | TSL 3 BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | AC037487.3-201 | ENST00000606668 | 112 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | MIR6078-201 | ENST00000611069 | 100 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | AC008163.1-205 | ENST00000413944 | 4649 nt | TSL 1 (best) BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | FSD1L-201 | ENST00000374707 | 7062 nt | TSL 1 (best) BASIC | 2.16 | □□□□□ -2.06 | | |
| YY1 | P25490 | RNU6-862P-201 | ENST00000362804 | 105 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.76-201 | ENST00000362931 | 109 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-324P-201 | ENST00000363957 | 106 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | SNORA63D-201 | ENST00000364359 | 132 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-60P-201 | ENST00000364792 | 103 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR597-201 | ENST00000384968 | 97 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNA5SP467-201 | ENST00000391274 | 118 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC104332.1-201 | ENST00000440471 | 797 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-1271P-201 | ENST00000517049 | 105 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR5002-201 | ENST00000584713 | 97 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC007229.1-201 | ENST00000590455 | 412 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL162424.1-201 | ENST00000602325 | 221 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL008718.3-201 | ENST00000610217 | 321 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC025539.1-201 | ENST00000515343 | 4019 nt | TSL 2 BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | PTPRQ-209 | ENST00000616559 | 8165 nt | TSL 5 BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | OR4C11-202 | ENST00000641580 | 2737 nt | APPRIS P1 BASIC | 2.15 | □□□□□ -2.07 | | |
| YY1 | P25490 | KIAA1551-201 | ENST00000312561 | 6230 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | FABP12-201 | ENST00000360464 | 551 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.489-201 | ENST00000384410 | 101 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-651P-201 | ENST00000411040 | 105 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL354695.1-201 | ENST00000427935 | 228 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | FTH1P12-201 | ENST00000432137 | 551 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | COX6CP14-201 | ENST00000469580 | 174 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-794P-201 | ENST00000517261 | 64 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | HMSD-204 | ENST00000526932 | 162 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR4529-201 | ENST00000578110 | 78 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR3935-201 | ENST00000583472 | 104 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC009779.6-201 | ENST00000603972 | 165 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL359075.3-201 | ENST00000613288 | 217 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC141273.2-201 | ENST00000618989 | 130 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | ZNF209P-201 | ENST00000593450 | 2304 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| YY1 | P25490 | CEP57L1-213 | ENST00000520883 | 2055 nt | TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.341-201 | ENST00000365341 | 102 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | LINC00583-201 | ENST00000381010 | 387 nt | TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-1289P-201 | ENST00000384431 | 106 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-35P-201 | ENST00000384530 | 107 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-763P-201 | ENST00000390865 | 106 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6ATAC23P-201 | ENST00000408448 | 123 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RPS27P22-201 | ENST00000478056 | 241 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU7-115P-201 | ENST00000516433 | 55 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-111P-201 | ENST00000517179 | 105 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | CARD18-203 | ENST00000532895 | 422 nt | TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | snoU18.1-201 | ENST00000629629 | 71 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | BRCA1-202 | ENST00000354071 | 4497 nt | TSL 1 (best) BASIC | 2.13 | □□□□□ -2.07 | | |
| YY1 | P25490 | CEP162-201 | ENST00000257766 | 5063 nt | TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-1019P-201 | ENST00000364424 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.277-201 | ENST00000364754 | 102 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-407P-201 | ENST00000365280 | 104 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNY4P28-201 | ENST00000365281 | 93 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-662P-201 | ENST00000384253 | 104 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-296P-201 | ENST00000384608 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR193B-201 | ENST00000384907 | 83 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU11-3P-201 | ENST00000391111 | 133 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR1253-201 | ENST00000408273 | 105 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-855P-201 | ENST00000410395 | 104 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNA5SP501-201 | ENST00000410990 | 112 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL592431.2-201 | ENST00000422198 | 171 nt | TSL 3 BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC068658.1-201 | ENST00000507509 | 388 nt | TSL 2 BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-1278P-201 | ENST00000516130 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU4-71P-201 | ENST00000516258 | 113 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNVU1-2-201 | ENST00000516326 | 135 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU7-172P-201 | ENST00000517125 | 64 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | MIR1273G-201 | ENST00000577677 | 100 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL512605.2-201 | ENST00000592972 | 256 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| YY1 | P25490 | XRCC4-205 | ENST00000511817 | 1636 nt | APPRIS P4 TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.117-201 | ENST00000363294 | 101 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-514P-201 | ENST00000384208 | 107 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.476-201 | ENST00000384347 | 108 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6ATAC19P-201 | ENST00000408096 | 110 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | HSPE1P21-201 | ENST00000438283 | 308 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU1-40P-201 | ENST00000516816 | 164 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU1-97P-201 | ENST00000516872 | 164 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL358944.1-201 | ENST00000528537 | 144 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL096840.1-201 | ENST00000603287 | 93 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC005972.2-201 | ENST00000604690 | 348 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC013791.1-201 | ENST00000616619 | 62 nt | BASIC | 2.11 | □□□□□ -2.07 | | |
| YY1 | P25490 | AC018630.2-201 | ENST00000534866 | 2403 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | ATP13A3-201 | ENST00000256031 | 7322 nt | APPRIS P1 TSL 5 BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | SNORD115-3-201 | ENST00000363100 | 82 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | Y_RNA.304-201 | ENST00000365011 | 112 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | CPEB3_ribozyme.1-201 | ENST00000408115 | 78 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNA5SP100-201 | ENST00000410903 | 110 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNA5SP59-201 | ENST00000410922 | 110 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-847P-201 | ENST00000411115 | 108 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL021397.1-201 | ENST00000451806 | 248 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | RN7SL274P-201 | ENST00000492268 | 272 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | AL163195.1-201 | ENST00000496941 | 348 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-63P-201 | ENST00000516690 | 95 nt | BASIC | 2.1 | □□□□□ -2.07 | | |
| YY1 | P25490 | RNU6-341P-201 | ENST00000516973 | 96 nt | BASIC | 2.1 | □□□□□ -2.07 | | |