Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
HOXA3O43365 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
HOXA3O43365 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
HOXA3O43365 Y_RNA.242-201ENST00000364473 110 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 SNORD50B-201ENST00000364995 70 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 SNORD116-14-201ENST00000383894 92 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 SNORD116-17-201ENST00000383929 92 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 SNORD116-15-201ENST00000384445 92 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 SNORD116-19-201ENST00000384729 92 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 MIR512-1-201ENST00000384913 84 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 MIR9-1-201ENST00000385198 89 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXA3O43365 AC096725.1-201ENST00000514266 313 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 RNU6-1333P-201ENST00000516162 93 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 SNORA18.4-201ENST00000516440 124 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 MIR5094-201ENST00000578766 85 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.22□□□□□ -2.05
HOXA3O43365 MIR4762-201ENST00000585261 75 ntBASIC2.22□□□□□ -2.05
HOXA3O43365 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXA3O43365 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXA3O43365 RNU6-1084P-201ENST00000362498 107 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 U8.1-201ENST00000362843 134 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 Y_RNA.120-201ENST00000363304 110 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 Y_RNA.265-201ENST00000364677 108 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 SNORA1-201ENST00000384107 130 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 MIR518A2-201ENST00000384966 87 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 RNU6-440P-201ENST00000390882 105 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 RNA5SP482-201ENST00000391269 118 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 MIR1283-2-201ENST00000408621 87 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 RNA5SP21-201ENST00000410917 96 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXA3O43365 HMGN2P3-201ENST00000433603 273 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 HMGN2P5-201ENST00000436882 273 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXA3O43365 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXA3O43365 RNU6-693P-201ENST00000516134 107 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 Y_RNA.686-201ENST00000516548 134 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 RNU7-28P-201ENST00000516759 62 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 ZNF861P-201ENST00000588126 639 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 AC069114.2-201ENST00000604699 304 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 MIR8054-201ENST00000620877 86 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 AP006437.1-201ENST00000641440 3685 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 AL161431.1-201ENST00000618966 4205 ntBASIC2.21□□□□□ -2.06
HOXA3O43365 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
HOXA3O43365 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.21□□□□□ -2.06
HOXA3O43365 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.2□□□□□ -2.06
HOXA3O43365 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
HOXA3O43365 RNA5SP205-201ENST00000364653 136 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 SNORD18B-201ENST00000365659 72 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 SNORD24-201ENST00000383884 75 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 MIR624-201ENST00000385217 97 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 RNA5SP127-201ENST00000411051 133 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 RNA5SP508-201ENST00000411327 119 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXA3O43365 RNA5SP76-201ENST00000516277 87 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 RNU6-1270P-201ENST00000517128 108 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 RNU1-104P-201ENST00000517280 175 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 MIR3129-201ENST00000581095 76 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 AC104984.5-201ENST00000586878 94 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 AL365205.2-201ENST00000594586 68 ntBASIC2.2□□□□□ -2.06
HOXA3O43365 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXA3O43365 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXA3O43365 RNU6-888P-201ENST00000363010 101 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 U8.5-201ENST00000364528 136 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 Y_RNA.294-201ENST00000364916 102 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 MIR802-201ENST00000390235 94 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 RNU6-735P-201ENST00000410612 107 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXA3O43365 SNRPGP13-201ENST00000442212 177 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 Y_RNA.692-201ENST00000516627 105 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 Y_RNA.757-201ENST00000578934 114 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 AL359881.1-201ENST00000602916 267 ntBASIC2.19□□□□□ -2.06
HOXA3O43365 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA3O43365 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA3O43365 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA3O43365 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
HOXA3O43365 SNORD14E-201ENST00000364009 85 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 snoU2-30.1-201ENST00000365012 70 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 HMGN2P39-201ENST00000398005 273 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.18□□□□□ -2.06
HOXA3O43365 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA3O43365 RNVU1-2-201ENST00000516326 135 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 SNORA31.10-201ENST00000516482 106 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 SNORD45.4-201ENST00000516629 73 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 MIR3121-201ENST00000579680 77 ntBASIC2.18□□□□□ -2.06
HOXA3O43365 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
HOXA3O43365 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA3O43365 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXA3O43365 MIR26A1-201ENST00000362205 77 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 RNU6-1292P-201ENST00000383856 107 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 RNU6-442P-201ENST00000383968 104 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 MIR181B1-201ENST00000385240 110 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 RNA5SP465-201ENST00000391195 109 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 AL603914.1-201ENST00000401964 204 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 AC069257.2-201ENST00000441819 155 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 STAG3L5P-204ENST00000443759 179 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 RNU6-659P-201ENST00000516454 104 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 RNU2-60P-201ENST00000517290 128 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 AC004486.1-201ENST00000546846 233 ntBASIC2.17□□□□□ -2.06
HOXA3O43365 MIR6817-201ENST00000615588 66 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms