Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.48■□□□□ 0.71
USP29Q9HBJ7 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.48■□□□□ 0.71
USP29Q9HBJ7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP29Q9HBJ7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.48■□□□□ 0.71
USP29Q9HBJ7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP29Q9HBJ7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 CD177P1-201ENST00000606252 935 ntBASIC19.47■□□□□ 0.71
USP29Q9HBJ7 AC073195.1-201ENST00000607241 877 ntBASIC19.47■□□□□ 0.71
USP29Q9HBJ7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.47■□□□□ 0.71
USP29Q9HBJ7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 KRT8P11-201ENST00000409686 1436 ntBASIC19.46■□□□□ 0.71
USP29Q9HBJ7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 KRT18P21-201ENST00000515767 1272 ntBASIC19.46■□□□□ 0.71
USP29Q9HBJ7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.46■□□□□ 0.71
USP29Q9HBJ7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.45■□□□□ 0.7
USP29Q9HBJ7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 AC131212.4-201ENST00000623606 975 ntBASIC19.45■□□□□ 0.7
USP29Q9HBJ7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP29Q9HBJ7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 MMP23A-201ENST00000234610 1017 ntBASIC19.44■□□□□ 0.7
USP29Q9HBJ7 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 TSPY15P-201ENST00000457163 923 ntBASIC19.44■□□□□ 0.7
USP29Q9HBJ7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms