Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
LIMCH1Q9UPQ0 MIR411-201ENST00000362239 96 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 SNORA16B-201ENST00000364674 135 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 SNORA3.2-201ENST00000408221 125 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 MIR548I3-201ENST00000408378 149 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 MIR548I1-201ENST00000408810 149 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 RNA5SP501-201ENST00000410990 112 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.644-201ENST00000459006 113 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 Y_RNA.674-201ENST00000516362 113 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 AL590808.1-201ENST00000618696 141 ntBASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
LIMCH1Q9UPQ0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AL359851.1-201ENST00000569460 4997 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AC008555.8-201ENST00000623602 2168 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-653P-201ENST00000363074 106 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 RNU6-950P-201ENST00000384651 107 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 MIR626-201ENST00000385032 94 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 RNA5SP425-201ENST00000410336 112 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 RN7SKP223-201ENST00000410582 62 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 PIGPP3-201ENST00000425307 415 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AC055731.1-201ENST00000474387 401 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 RNVU1-2-201ENST00000516326 135 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AC100767.1-201ENST00000528178 123 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AP002004.2-201ENST00000531656 154 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 SUB1P4-201ENST00000566062 339 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 AC064859.1-201ENST00000624741 174 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.28□□□□□ -2.04
LIMCH1Q9UPQ0 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 MIR367-201ENST00000362299 68 ntBASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 MIR520A-201ENST00000384862 85 ntBASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.793-201ENST00000411222 111 ntBASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 AC245047.4-201ENST00000433189 144 ntBASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 RNA5SP364-201ENST00000516938 78 ntBASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LIMCH1Q9UPQ0 AC131280.1-202ENST00000624067 4211 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.203-201ENST00000364106 102 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 SNORA63D-201ENST00000364359 132 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.267-201ENST00000364679 109 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 AL512604.1-201ENST00000404812 257 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 RNU2-40P-201ENST00000410833 196 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 RNA5SP489-201ENST00000410986 109 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 AC233266.1-201ENST00000454518 96 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 CBX3P4-201ENST00000538909 354 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 AC242852.1-201ENST00000612151 96 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 AC244015.1-201ENST00000622301 99 ntBASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.26□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-1020P-201ENST00000363684 107 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 RNU4-17P-201ENST00000365598 141 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 MIR17-201ENST00000385012 84 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 RNA5SP496-201ENST00000391240 109 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 MIR1261-201ENST00000408659 82 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.621-201ENST00000411065 96 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 AC245047.3-201ENST00000429428 127 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 RN7SL274P-201ENST00000492268 272 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 RNU7-28P-201ENST00000516759 62 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 AC022217.4-201ENST00000604389 163 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 FTX_2.1-201ENST00000618816 94 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 ZNF355P-201ENST00000427301 3216 ntBASIC2.25□□□□□ -2.05
LIMCH1Q9UPQ0 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 U8.2-201ENST00000363156 134 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.308-201ENST00000365043 101 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-209P-201ENST00000384118 107 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.555-201ENST00000384673 110 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RNU2-7P-201ENST00000410794 178 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RPS27P1-201ENST00000450552 247 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-237P-201ENST00000515985 71 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-1291P-201ENST00000516591 104 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 RNU2-56P-201ENST00000516826 190 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 AL929325.1-201ENST00000603096 117 ntBASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.24□□□□□ -2.05
LIMCH1Q9UPQ0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.24-201ENST00000362508 103 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-112P-201ENST00000363599 104 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.270-201ENST00000364693 104 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.435-201ENST00000384095 112 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 RNU4-70P-201ENST00000384579 139 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 HMGN2P38-201ENST00000423806 265 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 RNU7-120P-201ENST00000459334 63 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 AL049830.1-201ENST00000468034 425 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 RN7SKP164-201ENST00000516138 266 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms