Protein–RNA interactions for Protein: Q9UJU5

FOXD3, Forkhead box protein D3, humanhuman

Predicted RBP Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXD3Q9UJU5 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.96□□□□□ -1.94
FOXD3Q9UJU5 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
FOXD3Q9UJU5 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 Y_RNA.35-201ENST00000362601 101 ntBASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 SNORD115-3-201ENST00000363100 82 ntBASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 RPS26P48-201ENST00000491713 339 ntBASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 RNU6-56P-201ENST00000516986 93 ntBASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 AP006437.1-201ENST00000641440 3685 ntBASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
FOXD3Q9UJU5 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 Y_RNA.37-201ENST00000362606 108 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 RNU1-148P-201ENST00000384472 162 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 Y_RNA.547-201ENST00000384654 119 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 MIR128-1-201ENST00000384921 82 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 RNA5SP109-201ENST00000391010 116 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 AC115115.1-201ENST00000449927 248 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 RNU7-26P-201ENST00000458980 63 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 MIR4298-201ENST00000584380 73 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 AL137067.1-201ENST00000615933 120 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 MIR8054-201ENST00000620877 86 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 MIR376A2-201ENST00000636782 80 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 AL035425.3-201ENST00000564206 4996 ntBASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
FOXD3Q9UJU5 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 RNU1-70P-201ENST00000362618 164 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 RNU1-91P-201ENST00000364746 163 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 SNORA2.2-201ENST00000365473 135 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 Y_RNA.528-201ENST00000384575 108 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 RNU6-950P-201ENST00000384651 107 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 RNU6-440P-201ENST00000390882 105 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 MIR1263-201ENST00000408324 86 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 RNA5SP229-201ENST00000410809 99 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 AL445646.1-201ENST00000431784 216 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 UBBP3-201ENST00000445497 241 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 AC087499.4-201ENST00000448505 178 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 COX6CP6-201ENST00000490840 228 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 AC084364.2-201ENST00000546924 395 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 AL162274.2-201ENST00000614406 332 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 AC027279.3-201ENST00000625055 122 ntBASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
FOXD3Q9UJU5 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 ZNF720P1-201ENST00000562403 1939 ntBASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 SNORA38-201ENST00000363946 132 ntBASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 S100A11P2-201ENST00000467589 312 ntBASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 RN7SL504P-201ENST00000494496 287 ntBASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 uc_338.1-201ENST00000612113 180 ntBASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
FOXD3Q9UJU5 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 SNORD38C-201ENST00000384381 69 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 MIR570-201ENST00000384917 97 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 MIR548A1-201ENST00000385041 97 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 BX510359.4-201ENST00000423750 193 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 CALM2P4-201ENST00000430810 426 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 STAG3L5P-204ENST00000443759 179 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 RNU6-412P-201ENST00000516434 106 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 RNU7-70P-201ENST00000516941 66 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 MIR3613-201ENST00000579844 87 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 AC022202.1-201ENST00000613515 211 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 AC073476.4-201ENST00000628409 72 ntBASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
FOXD3Q9UJU5 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.9□□□□□ -1.94
FOXD3Q9UJU5 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.9□□□□□ -1.94
FOXD3Q9UJU5 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.9□□□□□ -1.94
FOXD3Q9UJU5 RNA5SP374-201ENST00000362939 125 ntBASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 Y_RNA.366-201ENST00000365540 102 ntBASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 RNA5SP465-201ENST00000391195 109 ntBASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 RN7SKP200-201ENST00000410564 320 ntBASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 HMGN1P18-201ENST00000457642 277 ntBASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXD3Q9UJU5 MIR422A-201ENST00000362286 90 ntBASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 SNORD56.5-201ENST00000364281 72 ntBASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 CST9LP2-201ENST00000437612 320 ntBASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.89□□□□□ -1.95
FOXD3Q9UJU5 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXD3Q9UJU5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
FOXD3Q9UJU5 RNU6-147P-201ENST00000383983 107 ntBASIC2.88□□□□□ -1.95
FOXD3Q9UJU5 Y_RNA.440-201ENST00000384120 114 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms