Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 AC091951.2-201ENST00000500762 203 ntBASIC0.31□□□□□ -2.36
CCDC88CQ9P219 AC022493.2-201ENST00000506122 481 ntBASIC0.31□□□□□ -2.36
CCDC88CQ9P219 SNORA40.9-201ENST00000515895 93 ntBASIC0.31□□□□□ -2.36
CCDC88CQ9P219 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.31□□□□□ -2.36
CCDC88CQ9P219 LARP7P1-201ENST00000605576 316 ntBASIC0.31□□□□□ -2.36
CCDC88CQ9P219 AL355073.2-201ENST00000612106 557 ntBASIC0.31□□□□□ -2.36
CCDC88CQ9P219 AC240442.1-201ENST00000616055 283 ntBASIC0.31□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.9-201ENST00000362354 101 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU6-222P-201ENST00000362438 107 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU5A-5P-201ENST00000411054 116 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU6-1199P-201ENST00000411249 104 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RPS3AP52-201ENST00000435639 297 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU4-57P-201ENST00000515980 135 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU6-120P-201ENST00000516077 103 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU6-63P-201ENST00000516690 95 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AP003716.2-201ENST00000528260 108 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 MIR4667-201ENST00000578933 66 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 MIR3684-201ENST00000579779 74 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 POLR3GP1-201ENST00000594073 261 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC113139.1-201ENST00000605049 239 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC004467.1-201ENST00000615678 330 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AL591926.4-201ENST00000616895 298 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.274-201ENST00000364714 101 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU4-9P-201ENST00000364951 139 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.370-201ENST00000365589 108 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU6-163P-201ENST00000384396 106 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 MIR452-201ENST00000385020 85 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 MIR516B2-201ENST00000385190 85 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU2-16P-201ENST00000410712 136 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU6-1001P-201ENST00000411265 100 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC244098.3-201ENST00000424803 96 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RPL30P15-201ENST00000457129 321 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU7-87P-201ENST00000459343 62 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.3□□□□□ -2.36
CCDC88CQ9P219 RNU7-41P-201ENST00000515917 61 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC023442.1-201ENST00000531247 422 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC005899.2-201ENST00000584353 90 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC104695.3-201ENST00000604052 296 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC002553.4-201ENST00000616896 331 ntBASIC0.3□□□□□ -2.36
CCDC88CQ9P219 AC023934.1-201ENST00000574529 2389 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 MTND4P12-201ENST00000498999 1377 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.101-201ENST00000363154 102 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.446-201ENST00000384178 104 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RNU6-831P-201ENST00000384548 107 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 MIR570-201ENST00000384917 97 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RNU4-14P-201ENST00000410858 122 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88CQ9P219 AL162725.1-201ENST00000435405 301 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RPEP5-201ENST00000441137 268 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RNU6-625P-201ENST00000459412 107 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RNU6-470P-201ENST00000515954 104 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RNU6-966P-201ENST00000516479 104 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 RNU1-54P-201ENST00000517181 120 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.29□□□□□ -2.36
CCDC88CQ9P219 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.29□□□□□ -2.36
CCDC88CQ9P219 AC023932.2-201ENST00000603176 175 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 AC098679.4-201ENST00000624241 654 ntBASIC0.29□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.146-201ENST00000363549 102 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.368-201ENST00000365547 113 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC117470.1-201ENST00000381974 330 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RNU6-1013P-201ENST00000384180 107 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 SNORD38C-201ENST00000384381 69 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.577-201ENST00000384794 101 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.594-201ENST00000410373 140 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RPS26P5-201ENST00000418544 335 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 MRPS18CP6-201ENST00000423587 223 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RPL23AP50-201ENST00000434149 455 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 MTND1P34-201ENST00000438556 671 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC104332.1-201ENST00000440471 797 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC233266.1-201ENST00000454518 96 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 MIR2053-201ENST00000459295 91 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RPL23AP54-201ENST00000495129 419 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC011352.1-201ENST00000512300 793 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.681-201ENST00000516445 113 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RNA5SP121-201ENST00000516537 101 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RNU7-43P-201ENST00000516554 64 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RNU6-358P-201ENST00000516564 75 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 RNU6-1096P-201ENST00000517089 102 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC134698.4-201ENST00000523451 826 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC100812.1-201ENST00000607622 580 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC242852.1-201ENST00000612151 96 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 Pinc.1-201ENST00000616452 154 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 AC244015.1-201ENST00000622301 99 ntBASIC0.28□□□□□ -2.36
CCDC88CQ9P219 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
CCDC88CQ9P219 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.28□□□□□ -2.36
CCDC88CQ9P219 Y_RNA.3-201ENST00000362331 103 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 Y_RNA.68-201ENST00000362881 102 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 RNU6-593P-201ENST00000364716 112 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 Y_RNA.390-201ENST00000383932 102 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 Y_RNA.458-201ENST00000384240 102 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 RNY3P4-201ENST00000384428 101 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 MIR520G-201ENST00000385064 90 ntBASIC0.28□□□□□ -2.37
CCDC88CQ9P219 MIR136-201ENST00000385207 82 ntBASIC0.28□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 152.8 ms