Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC244015.1-201ENST00000622301 99 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 Y_RNA.203-201ENST00000364106 102 ntBASIC2.27□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.233-201ENST00000364407 101 ntBASIC2.27□□□□□ -2.05
TDP1Q9NUW8 SNORA67.3-201ENST00000384366 140 ntBASIC2.27□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.571-201ENST00000384753 98 ntBASIC2.27□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.621-201ENST00000411065 96 ntBASIC2.27□□□□□ -2.05
TDP1Q9NUW8 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.27□□□□□ -2.05
TDP1Q9NUW8 IGLV3-17-201ENST00000519099 244 ntBASIC2.27□□□□□ -2.05
TDP1Q9NUW8 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.27□□□□□ -2.05
TDP1Q9NUW8 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.26□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.7-201ENST00000362352 102 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 RNU6-682P-201ENST00000363843 106 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.229-201ENST00000364347 113 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 RNU6-1080P-201ENST00000383982 107 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 RNA5SP109-201ENST00000391010 116 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 MIR1278-201ENST00000408753 81 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 RNU2-2P-201ENST00000410396 191 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 RPS27P1-201ENST00000450552 247 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 SCARNA8-201ENST00000515924 131 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 SCARNA16.3-201ENST00000516595 184 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 RNU2-4P-201ENST00000606190 192 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 MIR6895-201ENST00000613497 78 ntBASIC2.26□□□□□ -2.05
TDP1Q9NUW8 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.150-201ENST00000363562 102 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 RNU4-41P-201ENST00000364426 143 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.238-201ENST00000364441 102 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 MIR562-201ENST00000384894 95 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 AL023284.1-201ENST00000403956 276 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 MIR548I3-201ENST00000408378 149 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 MIR548I1-201ENST00000408810 149 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 MTND2P29-201ENST00000438595 412 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 snoU13.23-201ENST00000458863 104 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.25□□□□□ -2.05
TDP1Q9NUW8 RN7SKP164-201ENST00000516138 266 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 RNU6-861P-201ENST00000516745 106 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 RNU6-453P-201ENST00000516819 85 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 RNU2-19P-201ENST00000517288 84 ntBASIC2.25□□□□□ -2.05
TDP1Q9NUW8 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
TDP1Q9NUW8 AC092881.1-201ENST00000638218 2733 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
TDP1Q9NUW8 SNORA1B-201ENST00000362535 133 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 SNORA6-201ENST00000384033 151 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 RNU4-70P-201ENST00000384579 139 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 MIR616-201ENST00000385293 97 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 SNORD23.1-201ENST00000408212 104 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 AC245047.3-201ENST00000429428 127 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 AL591806.2-201ENST00000433122 173 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
TDP1Q9NUW8 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.24□□□□□ -2.05
TDP1Q9NUW8 AC245047.8-201ENST00000456455 284 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 AL358944.1-201ENST00000528537 144 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 AP002004.2-201ENST00000531656 154 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 SUB1P4-201ENST00000566062 339 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 DEFB122-202ENST00000569013 197 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 MIR4769-201ENST00000584126 77 ntBASIC2.24□□□□□ -2.05
TDP1Q9NUW8 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
TDP1Q9NUW8 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.121-201ENST00000363309 113 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 SNORA63D-201ENST00000364359 132 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.270-201ENST00000364693 104 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 RNU6-209P-201ENST00000384118 107 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.555-201ENST00000384673 110 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 MIR144-201ENST00000384886 86 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 SNORA48.3-201ENST00000391081 134 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 RN7SKP101-201ENST00000411376 320 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 AC009310.1-201ENST00000414414 451 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 AC055731.1-201ENST00000474387 401 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 RNU6-1219P-201ENST00000516143 112 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 SNORA31.11-201ENST00000516528 139 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 RNA5SP402-201ENST00000517148 110 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.23□□□□□ -2.05
TDP1Q9NUW8 U1.36-201ENST00000620684 176 ntBASIC2.23□□□□□ -2.05
TDP1Q9NUW8 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
TDP1Q9NUW8 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
TDP1Q9NUW8 RNU6-1209P-201ENST00000363655 107 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 RNU6-103P-201ENST00000363686 107 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.182-201ENST00000363880 111 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.796-201ENST00000364268 102 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 Y_RNA.799-201ENST00000364992 102 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 RNU6-886P-201ENST00000384319 105 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 MT-TT-201ENST00000387460 66 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 PCNPP3-201ENST00000393579 471 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 RN7SKP51-201ENST00000410781 304 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 AC069257.2-201ENST00000441819 155 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 RNU2-56P-201ENST00000516826 190 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
TDP1Q9NUW8 AC015712.3-201ENST00000559380 164 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 RPL23AP91-201ENST00000569211 455 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 MIR2681-201ENST00000581814 105 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.22□□□□□ -2.05
TDP1Q9NUW8 AL021707.8-201ENST00000609428 183 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 AL391903.3-201ENST00000612158 163 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 AC012640.5-201ENST00000623897 319 ntBASIC2.22□□□□□ -2.05
TDP1Q9NUW8 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.06
TDP1Q9NUW8 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
TDP1Q9NUW8 RNU6-112P-201ENST00000363599 104 ntBASIC2.21□□□□□ -2.06
TDP1Q9NUW8 Y_RNA.253-201ENST00000364562 112 ntBASIC2.21□□□□□ -2.06
TDP1Q9NUW8 RNA5SP496-201ENST00000391240 109 ntBASIC2.21□□□□□ -2.06
TDP1Q9NUW8 AL512604.1-201ENST00000404812 257 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 185.2 ms