Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 U1.36-201ENST00000620684 176 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC140Q96MF4 Y_RNA.261-201ENST00000364631 102 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 RNU6-950P-201ENST00000384651 107 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 U8.16-201ENST00000391279 133 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 MIR548O-201ENST00000408583 114 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 AC006028.1-201ENST00000438379 402 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 RNA5SP57-201ENST00000459463 123 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 RNU7-25P-201ENST00000516544 62 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 RNA5SP168-201ENST00000516642 112 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 UBL5P2-201ENST00000583788 219 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 AL365205.2-201ENST00000594586 68 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 AC006023.1-201ENST00000603944 259 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.41□□□□□ -2.02
CCDC140Q96MF4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC140Q96MF4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC140Q96MF4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
CCDC140Q96MF4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
CCDC140Q96MF4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.336-201ENST00000365307 109 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 RNU6-296P-201ENST00000384608 107 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 RNU6-1031P-201ENST00000384773 107 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 SNORD67-201ENST00000390833 111 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 NDUFB4P4-201ENST00000404822 243 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 AF228730.3-201ENST00000436691 102 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 RPL39P40-201ENST00000445481 146 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 RN7SL504P-201ENST00000494496 287 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 RNU7-12P-201ENST00000516030 62 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 SCARNA13-201ENST00000516672 275 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC140Q96MF4 MIR5004-201ENST00000579078 107 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 U7.2-201ENST00000607576 63 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 AC006441.5-201ENST00000612680 209 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 AL035425.3-201ENST00000564206 4996 ntBASIC2.4□□□□□ -2.03
CCDC140Q96MF4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC140Q96MF4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC140Q96MF4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC140Q96MF4 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC140Q96MF4 AC073325.2-201ENST00000339545 159 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIRLET7C-201ENST00000362160 84 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.218-201ENST00000364218 104 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 SNORD15B-201ENST00000384714 146 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 SNORA46-201ENST00000384762 135 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIR548A2-201ENST00000384956 97 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIR518F-201ENST00000384973 87 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIR634-201ENST00000385208 97 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIR624-201ENST00000385217 97 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 RNU2-51P-201ENST00000410708 197 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC140Q96MF4 RNU6-313P-201ENST00000516317 112 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 SCARNA16.3-201ENST00000516595 184 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 AC245166.1-201ENST00000521012 253 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIR4709-201ENST00000577272 72 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 AC015726.2-201ENST00000620112 122 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 MIR622-201ENST00000638396 96 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.39□□□□□ -2.03
CCDC140Q96MF4 Z82195.2-201ENST00000612348 18351 ntBASIC2.39□□□□□ -2.03
CCDC140Q96MF4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 RNA5SP276-201ENST00000362580 94 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 RNU6-235P-201ENST00000362644 107 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.52-201ENST00000362760 96 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 RNU6-508P-201ENST00000363231 103 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.120-201ENST00000363304 110 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 SNORA22C-201ENST00000384614 134 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.547-201ENST00000384654 119 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 SNORA48.2-201ENST00000390926 124 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 SNORD77.3-201ENST00000391113 65 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 RPL21P3-201ENST00000395517 478 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 SNRPGP14-201ENST00000435400 219 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 UQCRHP3-201ENST00000451503 251 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 CYCTP-201ENST00000504253 315 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 RNU4-57P-201ENST00000515980 135 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 RNU6-1333P-201ENST00000516162 93 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.690-201ENST00000516603 95 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.692-201ENST00000516627 105 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.757-201ENST00000578934 114 ntBASIC2.38□□□□□ -2.03
CCDC140Q96MF4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC140Q96MF4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
CCDC140Q96MF4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC140Q96MF4 MIR148B-201ENST00000362252 99 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 RNU6-309P-201ENST00000364573 106 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 U8.9-201ENST00000365667 134 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 RNU6-1292P-201ENST00000383856 107 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 SNORA54-201ENST00000384281 123 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC140Q96MF4 AC008267.6-201ENST00000441664 139 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 HMGN2P32-201ENST00000444648 269 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms