Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CYP2C59P-201ENST00000457790 269 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 CKS1BP2-201ENST00000497342 240 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 SNORA4.4-201ENST00000515921 135 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 RN7SKP179-201ENST00000516126 217 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 RNA5SP153-201ENST00000516498 76 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 RNU7-172P-201ENST00000517125 64 ntBASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.99□□□□□ -1.93
USHBP1Q8N6Y0 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-44P-201ENST00000384045 107 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 AC108210.2-201ENST00000503681 201 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 AC093259.1-201ENST00000509755 300 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 AC097462.1-201ENST00000514125 324 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 AC007536.1-201ENST00000533382 349 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 AC090049.2-201ENST00000550377 109 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 MIR4438-201ENST00000585271 93 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 uc_338.4-201ENST00000616635 176 ntBASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.98□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-978P-201ENST00000364371 103 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 MIR95-201ENST00000385072 81 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 FO393413.1-201ENST00000402892 195 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 AC123900.1-201ENST00000420390 96 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 AC092427.1-202ENST00000430569 476 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 RPL39P40-201ENST00000445481 146 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 RPL23AP91-201ENST00000569211 455 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 Y_RNA.757-201ENST00000578934 114 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 MIR3117-201ENST00000584034 78 ntBASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
USHBP1Q8N6Y0 RNU6-743P-201ENST00000364151 106 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-1056P-201ENST00000383996 107 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 MIR1253-201ENST00000408273 105 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 RNU2-70P-201ENST00000410718 179 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 AC104332.2-201ENST00000429959 156 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 RPS4XP11-201ENST00000446897 772 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 AC245102.2-201ENST00000448956 180 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 PRELID2P1-201ENST00000552837 301 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 MIR6766-201ENST00000622641 72 ntBASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.96□□□□□ -1.94
USHBP1Q8N6Y0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-461P-201ENST00000364195 107 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.332-201ENST00000365271 113 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 SNORA26-201ENST00000391286 122 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 SNORA26.7-201ENST00000391288 122 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 SNORD77.4-201ENST00000516158 81 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 AC011604.1-201ENST00000545978 196 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 U2.20-201ENST00000613956 192 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 U6.73-201ENST00000619194 103 ntBASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
USHBP1Q8N6Y0 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-1209P-201ENST00000363655 107 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 SNORA25.6-201ENST00000364121 118 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.796-201ENST00000364268 102 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.799-201ENST00000364992 102 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 Z96811.1-201ENST00000445880 108 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 RNU7-107P-201ENST00000459121 61 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.692-201ENST00000516627 105 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-56P-201ENST00000516986 93 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 DEFB122-202ENST00000569013 197 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 AL356280.1-201ENST00000603614 379 ntBASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
USHBP1Q8N6Y0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.634-201ENST00000364811 113 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-1336P-201ENST00000383886 109 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 RNA5SP492-201ENST00000411330 114 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 SNORD11-201ENST00000459124 84 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-1146P-201ENST00000516282 102 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-126P-201ENST00000516685 103 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 SNORA48.11-201ENST00000517015 89 ntBASIC2.93□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.120-201ENST00000363304 110 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 RNU1-23P-201ENST00000363361 144 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 SNORA11.4-201ENST00000408823 129 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 AC023141.11-201ENST00000508864 202 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-991P-201ENST00000516168 107 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-856P-201ENST00000516959 98 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 Y_RNA.712-201ENST00000517011 92 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 NDUFA5P6-201ENST00000542110 379 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 AC131055.1-201ENST00000584626 316 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 Pinc.1-201ENST00000616452 154 ntBASIC2.92□□□□□ -1.94
USHBP1Q8N6Y0 RNU1-96P-201ENST00000364163 162 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 MIR627-201ENST00000384979 97 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 MIR561-201ENST00000385216 97 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 RNU11-5P-201ENST00000391216 129 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 RNU6-1064P-201ENST00000410626 104 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 RNU2-63P-201ENST00000410792 194 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 UBBP3-201ENST00000445497 241 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 MIR4662B-201ENST00000579498 81 ntBASIC2.91□□□□□ -1.94
USHBP1Q8N6Y0 AC097639.2-201ENST00000603159 172 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms