Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC017071.1-201ENST00000564407 2204 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-349P-201ENST00000362402 107 ntBASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 AL627390.1-201ENST00000396055 340 ntBASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 RNU7-80P-201ENST00000459562 61 ntBASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 AC104027.1-201ENST00000521887 300 ntBASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 AP003484.1-201ENST00000530974 250 ntBASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 U6.105-201ENST00000637379 88 ntBASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
DEPDC4Q8N2C3 FAM35CP-201ENST00000554755 2470 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 MIRLET7C-201ENST00000362160 84 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 Y_RNA.198-201ENST00000364013 98 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 Y_RNA.454-201ENST00000384224 113 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 RN7SKP200-201ENST00000410564 320 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 BX510359.4-201ENST00000423750 193 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 UBBP3-201ENST00000445497 241 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 AL031737.1-201ENST00000450125 223 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 RNU7-26P-201ENST00000458980 63 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 AC114811.1-201ENST00000507207 168 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-240P-201ENST00000516098 97 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 SNORD36C-201ENST00000516733 66 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 MIR4778-201ENST00000577635 80 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 AC022202.1-201ENST00000613515 211 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 MIR7975-201ENST00000619350 68 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 AC073476.4-201ENST00000628409 72 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.19□□□□□ -1.9
DEPDC4Q8N2C3 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 SNORD56.3-201ENST00000363507 71 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 SNORA63D-201ENST00000364359 132 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RNU1-91P-201ENST00000364746 163 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RNU1-133P-201ENST00000364867 167 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-690P-201ENST00000365242 106 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 ATP5A1P2-201ENST00000412323 255 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RN7SL293P-201ENST00000481765 281 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-168P-201ENST00000516189 101 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RNA5SP170-201ENST00000517150 101 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 RNA5SP380-201ENST00000517190 98 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 AC015726.2-201ENST00000620112 122 ntBASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DEPDC4Q8N2C3 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 Y_RNA.85-201ENST00000363014 111 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 Y_RNA.116-201ENST00000363292 103 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 SNORA38-201ENST00000363946 132 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 RNY1P6-201ENST00000384193 109 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-163P-201ENST00000384396 106 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 RNVU1-14-201ENST00000384770 164 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 RNA5SP465-201ENST00000391195 109 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 AL034345.1-201ENST00000407768 123 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 SNORA31.10-201ENST00000516482 106 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 AC245060.5-201ENST00000610778 3293 ntBASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
DEPDC4Q8N2C3 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 MIR148B-201ENST00000362252 99 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 RNA5SP50-201ENST00000363731 107 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 Y_RNA.213-201ENST00000364178 111 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 RNA5SP51-201ENST00000364750 119 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-1107P-201ENST00000364817 104 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 SNORA18.7-201ENST00000516910 131 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 MIR5094-201ENST00000578766 85 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 ZNF861P-201ENST00000588126 639 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 uc_338.25-201ENST00000613756 156 ntBASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
DEPDC4Q8N2C3 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 RNU6-32P-201ENST00000383948 107 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 RNU6-13P-201ENST00000384248 107 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 RNU6-106P-201ENST00000384405 107 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 RNU6-12P-201ENST00000384604 107 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 RNU6-41P-201ENST00000384741 107 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 RNA5SP89-201ENST00000410300 108 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 Y_RNA.694-201ENST00000516677 117 ntBASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
DEPDC4Q8N2C3 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 RNU6-833P-201ENST00000363486 107 ntBASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 RNY4P6-201ENST00000363667 96 ntBASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 Y_RNA.351-201ENST00000365436 96 ntBASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 SNORD12C-201ENST00000386307 89 ntBASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 MIR759-201ENST00000390224 91 ntBASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 RNU11-3P-201ENST00000391111 133 ntBASIC3.14□□□□□ -1.91
DEPDC4Q8N2C3 MIR1283-2-201ENST00000408621 87 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms