Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU6-1072P-201ENST00000384703 107 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 RNU6-443P-201ENST00000384780 107 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 MIR1263-201ENST00000408324 86 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 MIR548O-201ENST00000408583 114 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 HMGN2P32-201ENST00000444648 269 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 RN7SL297P-201ENST00000483161 293 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 AC022217.4-201ENST00000604389 163 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.82□□□□□ -1.96
UBE3DQ7Z6J8 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 MAPK10-266ENST00000641066 6555 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 RNU6-1255P-201ENST00000363434 112 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 RNU6-1189P-201ENST00000383958 107 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 MIR887-201ENST00000401258 79 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 SNORA11.4-201ENST00000408823 129 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 RNA5SP89-201ENST00000410300 108 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 RNA5SP344-201ENST00000411081 104 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 CALM2P4-201ENST00000430810 426 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 AC006483.1-201ENST00000487308 313 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 AL163195.1-201ENST00000496941 348 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 AC004486.1-201ENST00000546846 233 ntBASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
UBE3DQ7Z6J8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 Y_RNA.116-201ENST00000363292 103 ntBASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 RPS29P24-201ENST00000486345 171 ntBASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 RNA5SP341-201ENST00000516261 117 ntBASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 AC007012.1-201ENST00000567192 175 ntBASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 AC026271.5-201ENST00000577873 130 ntBASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.8□□□□□ -1.96
UBE3DQ7Z6J8 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 SNORA33-201ENST00000363664 130 ntBASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 Y_RNA.333-201ENST00000365274 102 ntBASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 MIR1262-201ENST00000408276 93 ntBASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 SNRPGP14-201ENST00000435400 219 ntBASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 ZNF720P1-201ENST00000562403 1939 ntBASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
UBE3DQ7Z6J8 RNU6-1084P-201ENST00000362498 107 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 Y_RNA.85-201ENST00000363014 111 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 SNORD68-201ENST00000363214 84 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 SNORD115-28-201ENST00000363931 81 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 RNA5SP493-201ENST00000364115 91 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 Y_RNA.495-201ENST00000384435 112 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 MIR29C-201ENST00000385231 88 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 AC107083.1-201ENST00000439643 279 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 AL445687.1-201ENST00000439946 251 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 AC087499.4-201ENST00000448505 178 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 S100A11P2-201ENST00000467589 312 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 MIR3169-201ENST00000578032 83 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.78□□□□□ -1.96
UBE3DQ7Z6J8 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-862P-201ENST00000362804 105 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-268P-201ENST00000364174 107 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-1107P-201ENST00000364817 104 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 SNORA2.2-201ENST00000365473 135 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.366-201ENST00000365540 102 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 SNORA9-201ENST00000384215 133 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 UBE2Q2P12-201ENST00000414573 204 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 RPS29P6-201ENST00000438196 145 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 AL049873.1-201ENST00000480540 376 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 AP004217.1-201ENST00000480579 346 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 SNORA31.26-201ENST00000517250 137 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 MIR4325-201ENST00000583049 90 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 AC005786.1-201ENST00000588553 154 ntBASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
UBE3DQ7Z6J8 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.37-201ENST00000362606 108 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.49-201ENST00000362714 112 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-23P-201ENST00000363283 107 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 Y_RNA.198-201ENST00000364013 98 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 U8.9-201ENST00000365667 134 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 RNU6-106P-201ENST00000384405 107 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 MIR627-201ENST00000384979 97 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 SNORD12C-201ENST00000386307 89 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 AC245047.3-201ENST00000429428 127 ntBASIC2.76□□□□□ -1.97
UBE3DQ7Z6J8 AC069257.2-201ENST00000441819 155 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms