Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC131055.1-201ENST00000584626 316 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 AC090517.3-201ENST00000625170 141 ntBASIC2.6□□□□□ -1.99
USP39Q53GS9 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.6□□□□□ -1.99
USP39Q53GS9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
USP39Q53GS9 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
USP39Q53GS9 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
USP39Q53GS9 SNORA67.1-201ENST00000364749 141 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 Y_RNA.634-201ENST00000364811 113 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 SNORD31B-201ENST00000364977 69 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 SNORD58C-201ENST00000365223 64 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 SNORA72-201ENST00000384339 132 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 MIR1294-201ENST00000408503 142 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 AC245102.2-201ENST00000448956 180 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 SNORD11-201ENST00000459124 84 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 SNORD77.4-201ENST00000516158 81 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 RNA5SP153-201ENST00000516498 76 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 MIR4635-201ENST00000583759 79 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 MIR4658-201ENST00000584344 65 ntBASIC2.59□□□□□ -1.99
USP39Q53GS9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.59□□□□□ -2
USP39Q53GS9 AP006437.1-201ENST00000641440 3685 ntBASIC2.58□□□□□ -2
USP39Q53GS9 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
USP39Q53GS9 SNORA38-201ENST00000363946 132 ntBASIC2.58□□□□□ -2
USP39Q53GS9 RNU6-309P-201ENST00000364573 106 ntBASIC2.58□□□□□ -2
USP39Q53GS9 MIRLET7F2-201ENST00000385277 83 ntBASIC2.58□□□□□ -2
USP39Q53GS9 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.58□□□□□ -2
USP39Q53GS9 RNA5SP89-201ENST00000410300 108 ntBASIC2.58□□□□□ -2
USP39Q53GS9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.58□□□□□ -2
USP39Q53GS9 RPL30P4-201ENST00000429309 333 ntBASIC2.58□□□□□ -2
USP39Q53GS9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.58□□□□□ -2
USP39Q53GS9 RNA5SP320-201ENST00000516263 124 ntBASIC2.58□□□□□ -2
USP39Q53GS9 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.58□□□□□ -2
USP39Q53GS9 AC133485.4-201ENST00000561835 220 ntBASIC2.58□□□□□ -2
USP39Q53GS9 AC138907.4-201ENST00000570107 226 ntBASIC2.58□□□□□ -2
USP39Q53GS9 AC006435.5-201ENST00000624486 112 ntBASIC2.58□□□□□ -2
USP39Q53GS9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.58□□□□□ -2
USP39Q53GS9 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.58□□□□□ -2
USP39Q53GS9 AC080128.1-201ENST00000474389 1917 ntBASIC2.58□□□□□ -2
USP39Q53GS9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.57□□□□□ -2
USP39Q53GS9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
USP39Q53GS9 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.57□□□□□ -2
USP39Q53GS9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP39Q53GS9 Y_RNA.35-201ENST00000362601 101 ntBASIC2.57□□□□□ -2
USP39Q53GS9 Y_RNA.203-201ENST00000364106 102 ntBASIC2.57□□□□□ -2
USP39Q53GS9 Y_RNA.796-201ENST00000364268 102 ntBASIC2.57□□□□□ -2
USP39Q53GS9 Y_RNA.799-201ENST00000364992 102 ntBASIC2.57□□□□□ -2
USP39Q53GS9 RNU6-418P-201ENST00000384035 107 ntBASIC2.57□□□□□ -2
USP39Q53GS9 AL603914.1-201ENST00000401964 204 ntBASIC2.57□□□□□ -2
USP39Q53GS9 RPS26P45-201ENST00000471748 340 ntBASIC2.57□□□□□ -2
USP39Q53GS9 RPS29P21-201ENST00000496272 170 ntBASIC2.57□□□□□ -2
USP39Q53GS9 RNU6-781P-201ENST00000516377 101 ntBASIC2.57□□□□□ -2
USP39Q53GS9 SNORA31.15-201ENST00000516771 132 ntBASIC2.57□□□□□ -2
USP39Q53GS9 AL670379.3-201ENST00000605040 251 ntBASIC2.57□□□□□ -2
USP39Q53GS9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.57□□□□□ -2
USP39Q53GS9 uc_338.4-201ENST00000616635 176 ntBASIC2.57□□□□□ -2
USP39Q53GS9 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.57□□□□□ -2
USP39Q53GS9 AC009487.4-201ENST00000624969 3585 ntBASIC2.56□□□□□ -2
USP39Q53GS9 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.56□□□□□ -2
USP39Q53GS9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USP39Q53GS9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
USP39Q53GS9 RNA5SP289-201ENST00000362332 137 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU1-138P-201ENST00000384093 164 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU6-1235P-201ENST00000384559 107 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU6-136P-201ENST00000384663 107 ntBASIC2.56□□□□□ -2
USP39Q53GS9 MICF-203ENST00000432679 129 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RPS4XP11-201ENST00000446897 772 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU6-498P-201ENST00000459468 107 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU6-948P-201ENST00000516374 107 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU6-1061P-201ENST00000516530 99 ntBASIC2.56□□□□□ -2
USP39Q53GS9 Y_RNA.690-201ENST00000516603 95 ntBASIC2.56□□□□□ -2
USP39Q53GS9 NDUFA5P6-201ENST00000542110 379 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RPL23AP91-201ENST00000569211 455 ntBASIC2.56□□□□□ -2
USP39Q53GS9 AC091178.2-201ENST00000584401 117 ntBASIC2.56□□□□□ -2
USP39Q53GS9 MIR4765-201ENST00000585007 77 ntBASIC2.56□□□□□ -2
USP39Q53GS9 AC010297.1-201ENST00000623948 149 ntBASIC2.56□□□□□ -2
USP39Q53GS9 MIR7157-201ENST00000635801 60 ntBASIC2.56□□□□□ -2
USP39Q53GS9 AC080100.1-201ENST00000624239 5356 ntBASIC2.56□□□□□ -2
USP39Q53GS9 RNU1-22P-201ENST00000363334 158 ntBASIC2.55□□□□□ -2
USP39Q53GS9 RNU4-13P-201ENST00000364019 141 ntBASIC2.55□□□□□ -2
USP39Q53GS9 Y_RNA.309-201ENST00000365046 111 ntBASIC2.55□□□□□ -2
USP39Q53GS9 RNU6-1080P-201ENST00000383982 107 ntBASIC2.55□□□□□ -2
USP39Q53GS9 RNU1-52P-201ENST00000384190 164 ntBASIC2.55□□□□□ -2
USP39Q53GS9 SNORD116-21-201ENST00000384507 92 ntBASIC2.55□□□□□ -2
USP39Q53GS9 MIR562-201ENST00000384894 95 ntBASIC2.55□□□□□ -2
USP39Q53GS9 RNU2-70P-201ENST00000410718 179 ntBASIC2.55□□□□□ -2
USP39Q53GS9 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.55□□□□□ -2
USP39Q53GS9 RN7SL636P-201ENST00000497504 294 ntBASIC2.55□□□□□ -2
USP39Q53GS9 RNU6-168P-201ENST00000516189 101 ntBASIC2.55□□□□□ -2
USP39Q53GS9 IGKV3-31-201ENST00000523109 329 ntBASIC2.55□□□□□ -2
USP39Q53GS9 AC018630.3-201ENST00000542637 96 ntBASIC2.55□□□□□ -2
USP39Q53GS9 MIR4648-201ENST00000580107 72 ntBASIC2.55□□□□□ -2
USP39Q53GS9 MIR4769-201ENST00000584126 77 ntBASIC2.55□□□□□ -2
USP39Q53GS9 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.55□□□□□ -2
USP39Q53GS9 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP39Q53GS9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
USP39Q53GS9 RNU6-1209P-201ENST00000363655 107 ntBASIC2.54□□□□□ -2
USP39Q53GS9 RNU6-1240P-201ENST00000365155 104 ntBASIC2.54□□□□□ -2
USP39Q53GS9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.54□□□□□ -2
USP39Q53GS9 RNU6-1328P-201ENST00000410938 106 ntBASIC2.54□□□□□ -2
USP39Q53GS9 AL356320.1-201ENST00000429616 163 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms