Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MIR6766-201ENST00000622641 72 ntBASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC144BQ3MJ40 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-661P-201ENST00000362409 107 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.117-201ENST00000363294 101 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.122-201ENST00000363331 96 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 SNORD27-201ENST00000363981 72 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.477-201ENST00000384352 108 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 SNORD58.1-201ENST00000391313 66 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-437P-201ENST00000459408 95 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.673-201ENST00000516306 88 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.714-201ENST00000517065 90 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 MIR5002-201ENST00000584713 97 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 MIR219B-201ENST00000637023 88 ntBASIC2.51□□□□□ -2.01
CCDC144BQ3MJ40 MIRLET7G-201ENST00000362280 84 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-414P-201ENST00000363705 104 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 RNA5SP99-201ENST00000364020 114 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.476-201ENST00000384347 108 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-482P-201ENST00000391068 107 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 RNU7-34P-201ENST00000459394 64 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 AC079804.2-201ENST00000490376 200 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 RNU4-71P-201ENST00000516258 113 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 SNORA31.10-201ENST00000516482 106 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 AL929325.1-201ENST00000603096 117 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 AL008718.3-201ENST00000610217 321 ntBASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.203-201ENST00000364106 102 ntBASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.293-201ENST00000364908 93 ntBASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-1031P-201ENST00000384773 107 ntBASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 RPL30P13-201ENST00000418873 348 ntBASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 SNORA44.1-201ENST00000517031 108 ntBASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 AC005357.1-201ENST00000588399 301 ntBASIC2.49□□□□□ -2.01
CCDC144BQ3MJ40 SNORA4.2-201ENST00000365313 147 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-1080P-201ENST00000383982 107 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 STAG3L5P-204ENST00000443759 179 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 MTND1P19-201ENST00000511780 315 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-1007P-201ENST00000516586 107 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 SCARNA16.3-201ENST00000516595 184 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 AC110588.1-201ENST00000559699 137 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 AL442067.1-201ENST00000613261 223 ntBASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.60-201ENST00000362831 98 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 RNU6-717P-201ENST00000459076 104 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 HMGN1P7-201ENST00000491722 313 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 RNA5SP200-201ENST00000516360 103 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 MIR4724-201ENST00000579485 89 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 JPX_2.1-201ENST00000614161 69 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 Y_RNA.802-201ENST00000614892 130 ntBASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC144BQ3MJ40 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 MIR367-201ENST00000362299 68 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.65-201ENST00000362846 100 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 MIR526A2-201ENST00000390198 65 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 AL603825.1-201ENST00000438481 80 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 AC023449.1-201ENST00000454464 154 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 COX6CP14-201ENST00000469580 174 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 AL096840.1-201ENST00000603287 93 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 AC009831.4-201ENST00000620744 325 ntBASIC2.46□□□□□ -2.02
CCDC144BQ3MJ40 AC092881.1-201ENST00000638218 2733 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.292-201ENST00000364904 97 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.304-201ENST00000365011 112 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 SNORA8.3-201ENST00000384679 139 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 HMGN2P23-201ENST00000456759 269 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.680-201ENST00000516441 93 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 MIR4643-201ENST00000577473 78 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 MIR6132-201ENST00000622083 109 ntBASIC2.45□□□□□ -2.02
CCDC144BQ3MJ40 RNA5SP160-201ENST00000364866 120 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.539-201ENST00000384635 107 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 RNA5SP496-201ENST00000391240 109 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 JTBP1-201ENST00000441314 247 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 PGBD4P5-201ENST00000445958 426 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 RPL23AP42-201ENST00000471152 471 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 MIR514B-201ENST00000516774 80 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 MIR8074-201ENST00000615081 81 ntBASIC2.44□□□□□ -2.02
CCDC144BQ3MJ40 MIR126-201ENST00000362291 85 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 RNU4-41P-201ENST00000364426 143 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.253-201ENST00000364562 112 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.262-201ENST00000364641 102 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 RNA5SP138-201ENST00000365098 114 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 Y_RNA.552-201ENST00000384665 112 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 RNU6-651P-201ENST00000411040 105 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 AC090255.1-201ENST00000495779 349 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 OR9P1P-201ENST00000496431 281 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 RNU6-548P-201ENST00000517083 115 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 RNU6-111P-201ENST00000517179 105 ntBASIC2.43□□□□□ -2.02
CCDC144BQ3MJ40 AL591926.4-201ENST00000616895 298 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms