Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.73□□□□□ -1.97
SOX9P48436 SNRPGP8-201ENST00000454064 226 ntBASIC2.73□□□□□ -1.97
SOX9P48436 AP004217.1-201ENST00000480579 346 ntBASIC2.73□□□□□ -1.97
SOX9P48436 RNU7-28P-201ENST00000516759 62 ntBASIC2.73□□□□□ -1.97
SOX9P48436 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.73□□□□□ -1.97
SOX9P48436 DNAJC19P2-201ENST00000593340 302 ntBASIC2.73□□□□□ -1.97
SOX9P48436 AC022217.4-201ENST00000604389 163 ntBASIC2.73□□□□□ -1.97
SOX9P48436 Pinc.1-201ENST00000616452 154 ntBASIC2.73□□□□□ -1.97
SOX9P48436 AL591926.4-201ENST00000616895 298 ntBASIC2.73□□□□□ -1.97
SOX9P48436 U1.36-201ENST00000620684 176 ntBASIC2.73□□□□□ -1.97
SOX9P48436 AC064859.1-201ENST00000624741 174 ntBASIC2.73□□□□□ -1.97
SOX9P48436 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
SOX9P48436 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
SOX9P48436 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.72□□□□□ -1.97
SOX9P48436 RNA5SP289-201ENST00000362332 137 ntBASIC2.72□□□□□ -1.97
SOX9P48436 SNORD68-201ENST00000363214 84 ntBASIC2.72□□□□□ -1.97
SOX9P48436 RNU6-151P-201ENST00000364158 107 ntBASIC2.72□□□□□ -1.97
SOX9P48436 RNU6-950P-201ENST00000384651 107 ntBASIC2.72□□□□□ -1.97
SOX9P48436 SNORA12.1-201ENST00000390873 148 ntBASIC2.72□□□□□ -1.97
SOX9P48436 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.72□□□□□ -1.97
SOX9P48436 AL392103.1-201ENST00000447000 198 ntBASIC2.72□□□□□ -1.97
SOX9P48436 RPS27P1-201ENST00000450552 247 ntBASIC2.72□□□□□ -1.97
SOX9P48436 RNA5SP24-201ENST00000516478 95 ntBASIC2.72□□□□□ -1.97
SOX9P48436 RNU7-149P-201ENST00000516739 59 ntBASIC2.72□□□□□ -1.97
SOX9P48436 AC087685.1-201ENST00000587507 141 ntBASIC2.72□□□□□ -1.97
SOX9P48436 SNORA28-201ENST00000606769 126 ntBASIC2.72□□□□□ -1.97
SOX9P48436 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.72□□□□□ -1.97
SOX9P48436 Y_RNA.778-201ENST00000620203 90 ntBASIC2.72□□□□□ -1.97
SOX9P48436 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
SOX9P48436 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
SOX9P48436 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX9P48436 SNORA3A-201ENST00000364113 130 ntBASIC2.71□□□□□ -1.98
SOX9P48436 SNORD114-30-201ENST00000364448 72 ntBASIC2.71□□□□□ -1.98
SOX9P48436 Y_RNA.343-201ENST00000365354 112 ntBASIC2.71□□□□□ -1.98
SOX9P48436 Y_RNA.400-201ENST00000383963 111 ntBASIC2.71□□□□□ -1.98
SOX9P48436 MIR524-201ENST00000385242 87 ntBASIC2.71□□□□□ -1.98
SOX9P48436 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
SOX9P48436 RNA5SP482-201ENST00000391269 118 ntBASIC2.71□□□□□ -1.98
SOX9P48436 AC007064.1-201ENST00000412238 351 ntBASIC2.71□□□□□ -1.98
SOX9P48436 RNU6-197P-201ENST00000516680 100 ntBASIC2.71□□□□□ -1.98
SOX9P48436 RNU6-789P-201ENST00000517105 102 ntBASIC2.71□□□□□ -1.98
SOX9P48436 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.71□□□□□ -1.98
SOX9P48436 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX9P48436 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
SOX9P48436 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
SOX9P48436 RNU6-187P-201ENST00000384139 106 ntBASIC2.7□□□□□ -1.98
SOX9P48436 SNORA48.1-201ENST00000390879 135 ntBASIC2.7□□□□□ -1.98
SOX9P48436 SNORA3.2-201ENST00000408221 125 ntBASIC2.7□□□□□ -1.98
SOX9P48436 UBL5P3-201ENST00000475112 231 ntBASIC2.7□□□□□ -1.98
SOX9P48436 RNU6-346P-201ENST00000516288 111 ntBASIC2.7□□□□□ -1.98
SOX9P48436 RNA5SP153-201ENST00000516498 76 ntBASIC2.7□□□□□ -1.98
SOX9P48436 RNU7-121P-201ENST00000516604 62 ntBASIC2.7□□□□□ -1.98
SOX9P48436 AC078899.2-201ENST00000595282 212 ntBASIC2.7□□□□□ -1.98
SOX9P48436 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.7□□□□□ -1.98
SOX9P48436 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.7□□□□□ -1.98
SOX9P48436 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
SOX9P48436 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
SOX9P48436 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.7□□□□□ -1.98
SOX9P48436 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.69□□□□□ -1.98
SOX9P48436 MIR26A1-201ENST00000362205 77 ntBASIC2.69□□□□□ -1.98
SOX9P48436 RNU6-1084P-201ENST00000362498 107 ntBASIC2.69□□□□□ -1.98
SOX9P48436 RNU6-1138P-201ENST00000365359 106 ntBASIC2.69□□□□□ -1.98
SOX9P48436 Y_RNA.488-201ENST00000384403 102 ntBASIC2.69□□□□□ -1.98
SOX9P48436 MIR520A-201ENST00000384862 85 ntBASIC2.69□□□□□ -1.98
SOX9P48436 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
SOX9P48436 AL590004.2-201ENST00000404787 371 ntBASIC2.69□□□□□ -1.98
SOX9P48436 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.69□□□□□ -1.98
SOX9P48436 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.69□□□□□ -1.98
SOX9P48436 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX9P48436 SUMO1P4-201ENST00000429430 302 ntBASIC2.69□□□□□ -1.98
SOX9P48436 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX9P48436 RNVU1-2-201ENST00000516326 135 ntBASIC2.69□□□□□ -1.98
SOX9P48436 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX9P48436 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.69□□□□□ -1.98
SOX9P48436 MIR378D2-201ENST00000580636 98 ntBASIC2.69□□□□□ -1.98
SOX9P48436 MIR8054-201ENST00000620877 86 ntBASIC2.69□□□□□ -1.98
SOX9P48436 AC012640.5-201ENST00000623897 319 ntBASIC2.69□□□□□ -1.98
SOX9P48436 U8.2-201ENST00000363156 134 ntBASIC2.68□□□□□ -1.98
SOX9P48436 RNU6-440P-201ENST00000390882 105 ntBASIC2.68□□□□□ -1.98
SOX9P48436 SNORD88.1-201ENST00000408684 91 ntBASIC2.68□□□□□ -1.98
SOX9P48436 RN7SKP200-201ENST00000410564 320 ntBASIC2.68□□□□□ -1.98
SOX9P48436 RNA5SP501-201ENST00000410990 112 ntBASIC2.68□□□□□ -1.98
SOX9P48436 HMGN2P35-201ENST00000412164 270 ntBASIC2.68□□□□□ -1.98
SOX9P48436 AC245047.4-201ENST00000433189 144 ntBASIC2.68□□□□□ -1.98
SOX9P48436 AL606517.2-201ENST00000442855 241 ntBASIC2.68□□□□□ -1.98
SOX9P48436 STAG3L5P-204ENST00000443759 179 ntBASIC2.68□□□□□ -1.98
SOX9P48436 RNA5SP320-201ENST00000516263 124 ntBASIC2.68□□□□□ -1.98
SOX9P48436 RNU7-193P-201ENST00000516723 65 ntBASIC2.68□□□□□ -1.98
SOX9P48436 AL160236.1-201ENST00000556317 195 ntBASIC2.68□□□□□ -1.98
SOX9P48436 MIR4635-201ENST00000583759 79 ntBASIC2.68□□□□□ -1.98
SOX9P48436 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.68□□□□□ -1.98
SOX9P48436 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.68□□□□□ -1.98
SOX9P48436 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.68□□□□□ -1.98
SOX9P48436 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.67□□□□□ -1.98
SOX9P48436 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
SOX9P48436 RNU4-11P-201ENST00000365287 132 ntBASIC2.67□□□□□ -1.98
SOX9P48436 RNU6-484P-201ENST00000384016 107 ntBASIC2.67□□□□□ -1.98
SOX9P48436 MIR613-201ENST00000385248 95 ntBASIC2.67□□□□□ -1.98
SOX9P48436 MIR513C-201ENST00000401352 84 ntBASIC2.67□□□□□ -1.98
SOX9P48436 FTH1P12-201ENST00000432137 551 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 181.9 ms