Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PIGPP3-201ENST00000425307 415 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 AL162725.1-201ENST00000435405 301 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.71□□□□□ -2.3
CXCL12P48061 RNU6-966P-201ENST00000516479 104 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 RNA5SP330-201ENST00000517096 96 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 AC004812.1-201ENST00000540773 146 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 MIR4711-201ENST00000578274 70 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.71□□□□□ -2.3
CXCL12P48061 AC011476.5-201ENST00000615594 130 ntBASIC0.71□□□□□ -2.3
CXCL12P48061 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.71□□□□□ -2.3
CXCL12P48061 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
CXCL12P48061 RNU6-833P-201ENST00000363486 107 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RNU6-20P-201ENST00000384106 107 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RNU6-163P-201ENST00000384396 106 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 MIR891A-201ENST00000401237 79 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RNA5SP193-201ENST00000410353 107 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 Y_RNA.605-201ENST00000410577 105 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AC002429.1-201ENST00000437672 148 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 FCF1P4-201ENST00000448326 183 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RPS26P48-201ENST00000491713 339 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 SNORD79.1-201ENST00000516069 84 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RNU6-559P-201ENST00000516151 98 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RNU7-4P-201ENST00000516961 62 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AC144568.1-201ENST00000520139 137 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 MIR4661-201ENST00000582720 75 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AC120024.3-201ENST00000603167 156 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AL357312.1-201ENST00000603879 298 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AL096861.1-201ENST00000610899 123 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AC240442.1-201ENST00000616055 283 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AL591926.4-201ENST00000616895 298 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 AL008636.1-201ENST00000625038 1018 ntBASIC0.7□□□□□ -2.3
CXCL12P48061 RNU6-626P-201ENST00000363354 107 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 Y_RNA.251-201ENST00000364551 99 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 RNU6-708P-201ENST00000384217 107 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 RNY3P4-201ENST00000384428 101 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 MIR19B1-201ENST00000384829 87 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 RNU2-54P-201ENST00000410299 190 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 RNU6-1199P-201ENST00000411249 104 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC063976.4-201ENST00000421971 163 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC096644.2-201ENST00000429278 159 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 RPL39P39-201ENST00000455840 151 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 snoU13.25-201ENST00000458945 104 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 Y_RNA.653-201ENST00000459091 95 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 SNORD124-201ENST00000459577 104 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC117454.1-201ENST00000491120 168 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 CYCTP-201ENST00000504253 315 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC114811.1-201ENST00000507207 168 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 SNORA25.10-201ENST00000515926 124 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AL512605.2-201ENST00000592972 256 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC005176.2-201ENST00000596933 147 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC006380.1-201ENST00000603598 186 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AC113139.1-201ENST00000605049 239 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 MTND4LP32-201ENST00000636111 270 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 AL589743.1-201ENST00000551932 2712 ntBASIC0.69□□□□□ -2.3
CXCL12P48061 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
CXCL12P48061 Y_RNA.314-201ENST00000365114 102 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 Y_RNA.446-201ENST00000384178 104 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AC098614.3-201ENST00000438957 440 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AC093019.1-201ENST00000443135 252 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 LINC01399-202ENST00000458450 244 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.68□□□□□ -2.3
CXCL12P48061 SNORA70.12-201ENST00000516084 153 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 RNU6-1012P-201ENST00000516606 109 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 SNORA20.3-201ENST00000516880 132 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 MIR4659A-201ENST00000580269 81 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AC013244.2-201ENST00000603396 103 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AC004832.4-201ENST00000608952 331 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AL355073.2-201ENST00000612106 557 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 U2.1-201ENST00000618978 145 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 AC138305.3-201ENST00000624988 240 ntBASIC0.68□□□□□ -2.3
CXCL12P48061 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
CXCL12P48061 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.67□□□□□ -2.3
CXCL12P48061 RNU6-324P-201ENST00000363957 106 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 Y_RNA.258-201ENST00000364613 105 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 Y_RNA.336-201ENST00000365307 109 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 Y_RNA.390-201ENST00000383932 102 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 MIR559-201ENST00000385188 96 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 MIR146A-201ENST00000385201 99 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 SNORD12-201ENST00000391002 90 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 SNORD78.2-201ENST00000391076 69 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 RNU2-61P-201ENST00000411069 191 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 AC138393.2-201ENST00000414742 246 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 AL358176.2-201ENST00000425769 204 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 CHEK2P4-201ENST00000450340 246 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.67□□□□□ -2.3
CXCL12P48061 PRDX4P1-201ENST00000507189 574 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 RNU6-436P-201ENST00000516171 114 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 RNU6-155P-201ENST00000516347 100 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 SNORD111.1-201ENST00000516421 86 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 MIR3192-201ENST00000584920 77 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 AC027279.3-201ENST00000625055 122 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.67□□□□□ -2.3
CXCL12P48061 AC008163.1-202ENST00000636004 2889 ntBASIC0.67□□□□□ -2.3
CXCL12P48061 Y_RNA.85-201ENST00000363014 111 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 RNU6-969P-201ENST00000383900 105 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 RNU6-1297P-201ENST00000384415 104 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 SNORA80D-201ENST00000384488 135 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 SNORD116-29-201ENST00000384516 83 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 SNORA75.2-201ENST00000391138 150 ntBASIC0.66□□□□□ -2.3
CXCL12P48061 SNORA75.3-201ENST00000391231 150 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms