Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PART1_1.1-201ENST00000611761 217 ntBASIC1.19□□□□□ -2.22
CDX1P47902 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.19□□□□□ -2.22
CDX1P47902 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
CDX1P47902 Y_RNA.28-201ENST00000362554 111 ntBASIC1.18□□□□□ -2.22
CDX1P47902 Y_RNA.253-201ENST00000364562 112 ntBASIC1.18□□□□□ -2.22
CDX1P47902 Y_RNA.310-201ENST00000365063 113 ntBASIC1.18□□□□□ -2.22
CDX1P47902 SNORA63.7-201ENST00000365579 123 ntBASIC1.18□□□□□ -2.22
CDX1P47902 Y_RNA.383-201ENST00000383855 97 ntBASIC1.18□□□□□ -2.22
CDX1P47902 Y_RNA.389-201ENST00000383924 113 ntBASIC1.18□□□□□ -2.22
CDX1P47902 AL590004.1-201ENST00000405321 300 ntBASIC1.18□□□□□ -2.22
CDX1P47902 RNU4-62P-201ENST00000410125 130 ntBASIC1.18□□□□□ -2.22
CDX1P47902 RNU6-130P-201ENST00000411112 103 ntBASIC1.18□□□□□ -2.22
CDX1P47902 BTF3P4-201ENST00000418852 495 ntBASIC1.18□□□□□ -2.22
CDX1P47902 PMCHL1-202ENST00000423102 261 ntBASIC1.18□□□□□ -2.22
CDX1P47902 POLR2KP2-201ENST00000438155 177 ntBASIC1.18□□□□□ -2.22
CDX1P47902 RNU6-397P-201ENST00000516226 104 ntBASIC1.18□□□□□ -2.22
CDX1P47902 RNU6-165P-201ENST00000517170 99 ntBASIC1.18□□□□□ -2.22
CDX1P47902 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.18□□□□□ -2.22
CDX1P47902 AL357312.1-201ENST00000603879 298 ntBASIC1.18□□□□□ -2.22
CDX1P47902 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.18□□□□□ -2.22
CDX1P47902 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
CDX1P47902 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CDX1P47902 Y_RNA.128-201ENST00000363391 112 ntBASIC1.17□□□□□ -2.22
CDX1P47902 Y_RNA.368-201ENST00000365547 113 ntBASIC1.17□□□□□ -2.22
CDX1P47902 RNU6-1323P-201ENST00000384025 107 ntBASIC1.17□□□□□ -2.22
CDX1P47902 RNU6-474P-201ENST00000384243 107 ntBASIC1.17□□□□□ -2.22
CDX1P47902 SNORD41-201ENST00000386967 70 ntBASIC1.17□□□□□ -2.22
CDX1P47902 AP1B1P2-201ENST00000416196 106 ntBASIC1.17□□□□□ -2.22
CDX1P47902 RPL39P39-201ENST00000455840 151 ntBASIC1.17□□□□□ -2.22
CDX1P47902 HMGN1P10-201ENST00000474557 553 ntBASIC1.17□□□□□ -2.22
CDX1P47902 HMGN1P7-201ENST00000491722 313 ntBASIC1.17□□□□□ -2.22
CDX1P47902 RNA5SP61-201ENST00000516453 100 ntBASIC1.17□□□□□ -2.22
CDX1P47902 RNU6-1046P-201ENST00000516538 107 ntBASIC1.17□□□□□ -2.22
CDX1P47902 Y_RNA.714-201ENST00000517065 90 ntBASIC1.17□□□□□ -2.22
CDX1P47902 DNAJC19P9-201ENST00000555084 351 ntBASIC1.17□□□□□ -2.22
CDX1P47902 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.17□□□□□ -2.22
CDX1P47902 MTND4P29-201ENST00000503122 1372 ntBASIC1.17□□□□□ -2.22
CDX1P47902 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.17□□□□□ -2.22
CDX1P47902 U8.5-201ENST00000364528 136 ntBASIC1.16□□□□□ -2.22
CDX1P47902 RNU6-450P-201ENST00000364654 107 ntBASIC1.16□□□□□ -2.22
CDX1P47902 Y_RNA.535-201ENST00000384612 99 ntBASIC1.16□□□□□ -2.22
CDX1P47902 MIR522-201ENST00000385071 87 ntBASIC1.16□□□□□ -2.22
CDX1P47902 RNU6-823P-201ENST00000391042 103 ntBASIC1.16□□□□□ -2.22
CDX1P47902 RNU6-131P-201ENST00000391144 107 ntBASIC1.16□□□□□ -2.22
CDX1P47902 AC015922.2-201ENST00000435593 184 ntBASIC1.16□□□□□ -2.22
CDX1P47902 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.16□□□□□ -2.22
CDX1P47902 AC117454.1-201ENST00000491120 168 ntBASIC1.16□□□□□ -2.22
CDX1P47902 Y_RNA.715-201ENST00000517082 110 ntBASIC1.16□□□□□ -2.22
CDX1P47902 Y_RNA.721-201ENST00000517207 102 ntBASIC1.16□□□□□ -2.22
CDX1P47902 MIR4498-201ENST00000577599 66 ntBASIC1.16□□□□□ -2.22
CDX1P47902 MIR4762-201ENST00000585261 75 ntBASIC1.16□□□□□ -2.22
CDX1P47902 AL645939.4-201ENST00000604495 135 ntBASIC1.16□□□□□ -2.22
CDX1P47902 snoU13.31-201ENST00000607291 104 ntBASIC1.16□□□□□ -2.22
CDX1P47902 MIR376A1-201ENST00000616574 68 ntBASIC1.16□□□□□ -2.22
CDX1P47902 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
CDX1P47902 ZNF209P-201ENST00000593450 2304 ntBASIC1.16□□□□□ -2.22
CDX1P47902 SNORD113-8-201ENST00000363497 74 ntBASIC1.15□□□□□ -2.23
CDX1P47902 Y_RNA.148-201ENST00000363557 117 ntBASIC1.15□□□□□ -2.23
CDX1P47902 MIR222-201ENST00000384992 110 ntBASIC1.15□□□□□ -2.23
CDX1P47902 MIR452-201ENST00000385020 85 ntBASIC1.15□□□□□ -2.23
CDX1P47902 RNU6-1248P-201ENST00000391096 64 ntBASIC1.15□□□□□ -2.23
CDX1P47902 Y_RNA.645-201ENST00000391229 102 ntBASIC1.15□□□□□ -2.23
CDX1P47902 MIR1304-201ENST00000408243 91 ntBASIC1.15□□□□□ -2.23
CDX1P47902 Y_RNA.602-201ENST00000410535 92 ntBASIC1.15□□□□□ -2.23
CDX1P47902 Y_RNA.604-201ENST00000410574 102 ntBASIC1.15□□□□□ -2.23
CDX1P47902 SNRPGP10-201ENST00000432323 225 ntBASIC1.15□□□□□ -2.23
CDX1P47902 LINC01399-202ENST00000458450 244 ntBASIC1.15□□□□□ -2.23
CDX1P47902 RPL23AP54-201ENST00000495129 419 ntBASIC1.15□□□□□ -2.23
CDX1P47902 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.15□□□□□ -2.23
CDX1P47902 RNU7-40P-201ENST00000516397 64 ntBASIC1.15□□□□□ -2.23
CDX1P47902 SNORD45.4-201ENST00000516629 73 ntBASIC1.15□□□□□ -2.23
CDX1P47902 SNORA70.22-201ENST00000517160 124 ntBASIC1.15□□□□□ -2.23
CDX1P47902 AC024405.2-202ENST00000532731 184 ntBASIC1.15□□□□□ -2.23
CDX1P47902 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.15□□□□□ -2.23
CDX1P47902 AC136932.1-201ENST00000574771 208 ntBASIC1.15□□□□□ -2.23
CDX1P47902 AC104695.3-201ENST00000604052 296 ntBASIC1.15□□□□□ -2.23
CDX1P47902 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.15□□□□□ -2.23
CDX1P47902 AC134503.1-201ENST00000633048 54 ntBASIC1.15□□□□□ -2.23
CDX1P47902 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.23
CDX1P47902 U8.1-201ENST00000362843 134 ntBASIC1.14□□□□□ -2.23
CDX1P47902 Y_RNA.183-201ENST00000363882 113 ntBASIC1.14□□□□□ -2.23
CDX1P47902 Y_RNA.286-201ENST00000364813 102 ntBASIC1.14□□□□□ -2.23
CDX1P47902 U8.7-201ENST00000364940 136 ntBASIC1.14□□□□□ -2.23
CDX1P47902 snoU2-30.1-201ENST00000365012 70 ntBASIC1.14□□□□□ -2.23
CDX1P47902 Y_RNA.338-201ENST00000365320 114 ntBASIC1.14□□□□□ -2.23
CDX1P47902 MIR526A1-201ENST00000384897 85 ntBASIC1.14□□□□□ -2.23
CDX1P47902 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.14□□□□□ -2.23
CDX1P47902 MIR1298-201ENST00000408783 112 ntBASIC1.14□□□□□ -2.23
CDX1P47902 MTCO2P12-201ENST00000427426 682 ntBASIC1.14□□□□□ -2.23
CDX1P47902 AC009474.2-201ENST00000451383 136 ntBASIC1.14□□□□□ -2.23
CDX1P47902 RNU7-95P-201ENST00000459222 64 ntBASIC1.14□□□□□ -2.23
CDX1P47902 AC010655.3-201ENST00000478818 450 ntBASIC1.14□□□□□ -2.23
CDX1P47902 AL133373.1-201ENST00000497098 94 ntBASIC1.14□□□□□ -2.23
CDX1P47902 AC108729.3-201ENST00000513484 108 ntBASIC1.14□□□□□ -2.23
CDX1P47902 SNORA31.2-201ENST00000516019 134 ntBASIC1.14□□□□□ -2.23
CDX1P47902 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.14□□□□□ -2.23
CDX1P47902 AP003357.1-201ENST00000604497 148 ntBASIC1.14□□□□□ -2.23
CDX1P47902 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.14□□□□□ -2.23
CDX1P47902 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.14□□□□□ -2.23
CDX1P47902 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 288.8 ms