Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PGBD4P5-201ENST00000445958 426 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 AC091021.1-201ENST00000468051 388 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 SUMO2P16-201ENST00000519475 264 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.28□□□□□ -2.2
TNFRSF4P43489 MIR4423-201ENST00000580922 80 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 AL162424.1-201ENST00000602325 221 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 AC136443.5-201ENST00000603741 370 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 PRR13P7-201ENST00000605538 430 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.28□□□□□ -2.2
TNFRSF4P43489 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.28□□□□□ -2.21
TNFRSF4P43489 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
TNFRSF4P43489 SNORA63-201ENST00000363450 132 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 Y_RNA.602-201ENST00000410535 92 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 RNA5SP61-201ENST00000516453 100 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 RNU6-1337P-201ENST00000516525 95 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 RNU6-897P-201ENST00000517135 105 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 AC131281.1-201ENST00000522984 164 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.27□□□□□ -2.21
TNFRSF4P43489 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.27□□□□□ -2.21
TNFRSF4P43489 AC113195.1-201ENST00000579952 141 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 SNORA4-201ENST00000584302 138 ntBASIC1.27□□□□□ -2.21
TNFRSF4P43489 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.26□□□□□ -2.21
TNFRSF4P43489 SNORD114-7-201ENST00000362520 77 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 SNORD113-8-201ENST00000363497 74 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 Y_RNA.183-201ENST00000363882 113 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 Y_RNA.210-201ENST00000364161 110 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 Y_RNA.380-201ENST00000365663 111 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 SNORD26-201ENST00000384147 75 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 SNORD63-201ENST00000384262 68 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RNU6-1011P-201ENST00000384668 107 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RNU6-855P-201ENST00000410395 104 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RPL30P13-201ENST00000418873 348 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 AC233266.1-201ENST00000454518 96 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RNU6-436P-201ENST00000516171 114 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RNY3P15-201ENST00000516297 97 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RNU6-764P-201ENST00000516396 105 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 RNU6-1291P-201ENST00000516591 104 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 AC136932.1-201ENST00000574771 208 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 MIR4300-201ENST00000581016 96 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 DEFB117-201ENST00000602356 141 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 SNORA28-201ENST00000606769 126 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 AC242852.1-201ENST00000612151 96 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 AC244015.1-201ENST00000622301 99 ntBASIC1.26□□□□□ -2.21
TNFRSF4P43489 Y_RNA.152-201ENST00000363578 100 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 RNU6-117P-201ENST00000365415 107 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 Y_RNA.361-201ENST00000365515 120 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 SNORD116-13-201ENST00000384408 92 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 RNU2-61P-201ENST00000411069 191 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.25□□□□□ -2.21
TNFRSF4P43489 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.25□□□□□ -2.21
TNFRSF4P43489 AC024067.1-201ENST00000426199 223 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 POLR2KP2-201ENST00000438155 177 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 HSPE1P13-201ENST00000451143 297 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 RPL30P7-201ENST00000479312 323 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 RNU2-56P-201ENST00000516826 190 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 RNU6-1137P-201ENST00000517073 99 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 MIR3145-201ENST00000580727 82 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 AL355297.3-201ENST00000604082 446 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 SNORD113-5-201ENST00000607261 78 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 AC073349.3-201ENST00000617616 186 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 AL513423.1-201ENST00000621695 132 ntBASIC1.25□□□□□ -2.21
TNFRSF4P43489 Y_RNA.265-201ENST00000364677 108 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 Y_RNA.286-201ENST00000364813 102 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 SNORD114-22-201ENST00000365423 72 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 MIR562-201ENST00000384894 95 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 MIR520G-201ENST00000385064 90 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 RNU6-710P-201ENST00000410424 105 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 RNA5SP511-201ENST00000410487 115 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 Y_RNA.621-201ENST00000411065 96 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 STAG3L5P-204ENST00000443759 179 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.24□□□□□ -2.21
TNFRSF4P43489 SEPT14P8-201ENST00000508026 178 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 MRPS35P2-201ENST00000508242 191 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 RNA5SP220-201ENST00000516298 104 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 RNU6-1096P-201ENST00000517089 102 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 AL512310.8-201ENST00000550183 120 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 AC006504.6-201ENST00000590142 199 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 AL078603.1-201ENST00000603824 313 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 SNORD3E-202ENST00000627253 216 ntBASIC1.24□□□□□ -2.21
TNFRSF4P43489 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.24□□□□□ -2.21
TNFRSF4P43489 MIR26B-201ENST00000362251 77 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 SNORD81.1-201ENST00000363064 77 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 Y_RNA.153-201ENST00000363615 91 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 Y_RNA.172-201ENST00000363765 102 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 Y_RNA.383-201ENST00000383855 97 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 RNU6-42P-201ENST00000384165 107 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 RNU6-985P-201ENST00000410182 104 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 RNU6-955P-201ENST00000410497 104 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 AC113618.1-201ENST00000416747 285 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 AC010655.3-201ENST00000478818 450 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 RNU6-341P-201ENST00000516973 96 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 CYP3A52P-201ENST00000563326 91 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 AC091178.2-201ENST00000584401 117 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 MIR8065-201ENST00000620577 100 ntBASIC1.23□□□□□ -2.21
TNFRSF4P43489 SNORA1B-201ENST00000362535 133 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 Y_RNA.105-201ENST00000363182 111 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 RNU6-770P-201ENST00000363929 105 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 Y_RNA.326-201ENST00000365176 113 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 Y_RNA.341-201ENST00000365341 102 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms