Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
MSX2P35548 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
MSX2P35548 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
MSX2P35548 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSX2P35548 SNORA44-201ENST00000384584 132 ntBASIC2.45□□□□□ -2.02
MSX2P35548 RNU6-476P-201ENST00000384726 107 ntBASIC2.45□□□□□ -2.02
MSX2P35548 SNORA40.5-201ENST00000391061 128 ntBASIC2.45□□□□□ -2.02
MSX2P35548 EEF1A1P41-201ENST00000414667 207 ntBASIC2.45□□□□□ -2.02
MSX2P35548 MLLT10P1-201ENST00000418346 262 ntBASIC2.45□□□□□ -2.02
MSX2P35548 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.45□□□□□ -2.02
MSX2P35548 AC009238.1-201ENST00000442165 424 ntBASIC2.45□□□□□ -2.02
MSX2P35548 AL158147.1-201ENST00000443970 75 ntBASIC2.45□□□□□ -2.02
MSX2P35548 AC009237.6-201ENST00000446969 424 ntBASIC2.45□□□□□ -2.02
MSX2P35548 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.45□□□□□ -2.02
MSX2P35548 RNU7-99P-201ENST00000516271 62 ntBASIC2.45□□□□□ -2.02
MSX2P35548 RNU6-667P-201ENST00000517186 102 ntBASIC2.45□□□□□ -2.02
MSX2P35548 AC007751.1-201ENST00000529260 376 ntBASIC2.45□□□□□ -2.02
MSX2P35548 MIR4446-201ENST00000578505 67 ntBASIC2.45□□□□□ -2.02
MSX2P35548 MIR4662B-201ENST00000579498 81 ntBASIC2.45□□□□□ -2.02
MSX2P35548 AL049779.4-201ENST00000604500 156 ntBASIC2.45□□□□□ -2.02
MSX2P35548 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.45□□□□□ -2.02
MSX2P35548 U6.108-201ENST00000637764 58 ntBASIC2.45□□□□□ -2.02
MSX2P35548 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
MSX2P35548 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
MSX2P35548 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
MSX2P35548 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
MSX2P35548 ZNF271P-202ENST00000465539 1970 ntBASIC2.44□□□□□ -2.02
MSX2P35548 RNU6-1144P-201ENST00000384247 104 ntBASIC2.44□□□□□ -2.02
MSX2P35548 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
MSX2P35548 RNY4P18-201ENST00000391107 89 ntBASIC2.44□□□□□ -2.02
MSX2P35548 SNORA26-201ENST00000391286 122 ntBASIC2.44□□□□□ -2.02
MSX2P35548 RNU6-1186P-201ENST00000410429 97 ntBASIC2.44□□□□□ -2.02
MSX2P35548 AC007064.1-201ENST00000412238 351 ntBASIC2.44□□□□□ -2.02
MSX2P35548 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.44□□□□□ -2.02
MSX2P35548 AL353689.1-201ENST00000438895 199 ntBASIC2.44□□□□□ -2.02
MSX2P35548 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.44□□□□□ -2.02
MSX2P35548 RNU6-1146P-201ENST00000516282 102 ntBASIC2.44□□□□□ -2.02
MSX2P35548 RNA5SP282-201ENST00000516355 108 ntBASIC2.44□□□□□ -2.02
MSX2P35548 RNA5SP402-201ENST00000517148 110 ntBASIC2.44□□□□□ -2.02
MSX2P35548 RNU1-104P-201ENST00000517280 175 ntBASIC2.44□□□□□ -2.02
MSX2P35548 CYCSP26-201ENST00000534107 320 ntBASIC2.44□□□□□ -2.02
MSX2P35548 AC079600.2-201ENST00000550076 130 ntBASIC2.44□□□□□ -2.02
MSX2P35548 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.44□□□□□ -2.02
MSX2P35548 JPX_2.1-201ENST00000614161 69 ntBASIC2.44□□□□□ -2.02
MSX2P35548 MIR6129-201ENST00000616087 109 ntBASIC2.44□□□□□ -2.02
MSX2P35548 MIR338-201ENST00000636369 67 ntBASIC2.44□□□□□ -2.02
MSX2P35548 AL391516.1-201ENST00000554380 2449 ntBASIC2.44□□□□□ -2.02
MSX2P35548 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
MSX2P35548 RNU6-508P-201ENST00000363231 103 ntBASIC2.43□□□□□ -2.02
MSX2P35548 Y_RNA.114-201ENST00000363265 113 ntBASIC2.43□□□□□ -2.02
MSX2P35548 RNU1-51P-201ENST00000365345 176 ntBASIC2.43□□□□□ -2.02
MSX2P35548 SNORA25B-201ENST00000365507 128 ntBASIC2.43□□□□□ -2.02
MSX2P35548 RNU1-52P-201ENST00000384190 164 ntBASIC2.43□□□□□ -2.02
MSX2P35548 RNU1-148P-201ENST00000384472 162 ntBASIC2.43□□□□□ -2.02
MSX2P35548 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
MSX2P35548 AL603914.1-201ENST00000401964 204 ntBASIC2.43□□□□□ -2.02
MSX2P35548 RNA5SP367-201ENST00000516557 118 ntBASIC2.43□□□□□ -2.02
MSX2P35548 RNU6-126P-201ENST00000516685 103 ntBASIC2.43□□□□□ -2.02
MSX2P35548 AC007229.1-201ENST00000590455 412 ntBASIC2.43□□□□□ -2.02
MSX2P35548 AL365205.2-201ENST00000594586 68 ntBASIC2.43□□□□□ -2.02
MSX2P35548 AL353149.1-201ENST00000610667 244 ntBASIC2.43□□□□□ -2.02
MSX2P35548 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.43□□□□□ -2.02
MSX2P35548 Y_RNA.253-201ENST00000364562 112 ntBASIC2.42□□□□□ -2.02
MSX2P35548 MIR624-201ENST00000385217 97 ntBASIC2.42□□□□□ -2.02
MSX2P35548 RNA5SP467-201ENST00000391274 118 ntBASIC2.42□□□□□ -2.02
MSX2P35548 MIR891A-201ENST00000401237 79 ntBASIC2.42□□□□□ -2.02
MSX2P35548 AL139132.1-201ENST00000431587 344 ntBASIC2.42□□□□□ -2.02
MSX2P35548 HMGN1P7-201ENST00000491722 313 ntBASIC2.42□□□□□ -2.02
MSX2P35548 MRPS17P9-201ENST00000511924 393 ntBASIC2.42□□□□□ -2.02
MSX2P35548 RNU6-1041P-201ENST00000516254 102 ntBASIC2.42□□□□□ -2.02
MSX2P35548 NDUFA5P6-201ENST00000542110 379 ntBASIC2.42□□□□□ -2.02
MSX2P35548 MIR3124-201ENST00000582636 67 ntBASIC2.42□□□□□ -2.02
MSX2P35548 AL033523.1-201ENST00000605153 153 ntBASIC2.42□□□□□ -2.02
MSX2P35548 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
MSX2P35548 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
MSX2P35548 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
MSX2P35548 AL136360.1-201ENST00000503377 1900 ntBASIC2.42□□□□□ -2.02
MSX2P35548 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
MSX2P35548 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.41□□□□□ -2.02
MSX2P35548 Y_RNA.52-201ENST00000362760 96 ntBASIC2.41□□□□□ -2.02
MSX2P35548 SNORA33-201ENST00000363664 130 ntBASIC2.41□□□□□ -2.02
MSX2P35548 SNORD114-6-201ENST00000364393 72 ntBASIC2.41□□□□□ -2.02
MSX2P35548 RNU6-309P-201ENST00000364573 106 ntBASIC2.41□□□□□ -2.02
MSX2P35548 SNORA67.1-201ENST00000364749 141 ntBASIC2.41□□□□□ -2.02
MSX2P35548 AL117342.1-201ENST00000404861 406 ntBASIC2.41□□□□□ -2.02
MSX2P35548 Y_RNA.630-201ENST00000411370 108 ntBASIC2.41□□□□□ -2.02
MSX2P35548 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.41□□□□□ -2.02
MSX2P35548 SRIP3-201ENST00000413200 219 ntBASIC2.41□□□□□ -2.02
MSX2P35548 AC018634.1-201ENST00000437554 401 ntBASIC2.41□□□□□ -2.02
MSX2P35548 RPS12P2-201ENST00000439728 269 ntBASIC2.41□□□□□ -2.02
MSX2P35548 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.41□□□□□ -2.02
MSX2P35548 RNU6-1291P-201ENST00000516591 104 ntBASIC2.41□□□□□ -2.02
MSX2P35548 Y_RNA.690-201ENST00000516603 95 ntBASIC2.41□□□□□ -2.02
MSX2P35548 RNU6-365P-201ENST00000517113 106 ntBASIC2.41□□□□□ -2.02
MSX2P35548 AL359075.3-201ENST00000613288 217 ntBASIC2.41□□□□□ -2.02
MSX2P35548 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.41□□□□□ -2.02
MSX2P35548 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.41□□□□□ -2.02
MSX2P35548 MIR6079-201ENST00000635807 62 ntBASIC2.41□□□□□ -2.02
MSX2P35548 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.41□□□□□ -2.02
MSX2P35548 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 144.5 ms