Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
COL8A1P27658 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL8A1P27658 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.14□□□□□ -1.91
COL8A1P27658 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
COL8A1P27658 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.14□□□□□ -1.91
COL8A1P27658 RNU6-1084P-201ENST00000362498 107 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 SNORD115-2-201ENST00000362842 82 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 SNORD115-27-201ENST00000364430 82 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 SNORD115-20-201ENST00000365099 82 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.14□□□□□ -1.91
COL8A1P27658 RNU7-113P-201ENST00000459273 62 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 SNORA31.4-201ENST00000516049 129 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 AP000867.2-201ENST00000532468 320 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 MIR3945-201ENST00000581853 98 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 RPL12P50-201ENST00000603116 116 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 MIR7851-201ENST00000610611 160 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.14□□□□□ -1.91
COL8A1P27658 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.14□□□□□ -1.91
COL8A1P27658 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.14□□□□□ -1.91
COL8A1P27658 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
COL8A1P27658 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.14□□□□□ -1.91
COL8A1P27658 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.14□□□□□ -1.91
COL8A1P27658 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
COL8A1P27658 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.14□□□□□ -1.91
COL8A1P27658 AC008264.2-201ENST00000610193 3731 ntBASIC3.14□□□□□ -1.91
COL8A1P27658 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.13□□□□□ -1.91
COL8A1P27658 OTUD4P1-201ENST00000237841 3067 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.13□□□□□ -1.91
COL8A1P27658 SNORA1B-201ENST00000362535 133 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 SNORD68-201ENST00000363214 84 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 SNORA27-201ENST00000384323 126 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 MIR519C-201ENST00000385053 87 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 AC060773.1-201ENST00000421698 310 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.13□□□□□ -1.91
COL8A1P27658 RNU7-170P-201ENST00000459303 61 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 RNU7-96P-201ENST00000459535 64 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 AC090255.1-201ENST00000495779 349 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 RNU6-998P-201ENST00000515894 101 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 RNA5SP112-201ENST00000515937 99 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 RNU1-61P-201ENST00000516107 151 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 RNU6-523P-201ENST00000516304 54 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 MIR1248-201ENST00000629190 106 ntBASIC3.13□□□□□ -1.91
COL8A1P27658 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL8A1P27658 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
COL8A1P27658 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL8A1P27658 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
COL8A1P27658 IPO8P1-201ENST00000455509 3109 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL8A1P27658 MIR423-201ENST00000362201 94 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 snoU2-30.2-201ENST00000362805 70 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 RNA5SP167-201ENST00000365461 116 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 AC244505.4-201ENST00000434905 287 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 SSXP5-201ENST00000443473 287 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 AC125388.1-201ENST00000459631 156 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 RNU6-586P-201ENST00000517265 104 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 AC140658.3-201ENST00000567603 271 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.12□□□□□ -1.91
COL8A1P27658 MIR4765-201ENST00000585007 77 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 RNU6-86P-201ENST00000606534 107 ntBASIC3.12□□□□□ -1.91
COL8A1P27658 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.12□□□□□ -1.91
COL8A1P27658 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL8A1P27658 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
COL8A1P27658 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
COL8A1P27658 AC092881.1-201ENST00000638218 2733 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
COL8A1P27658 SNORD115-37-201ENST00000363768 82 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.11□□□□□ -1.91
COL8A1P27658 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.11□□□□□ -1.91
COL8A1P27658 RPS12P2-201ENST00000439728 269 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 AC069257.2-201ENST00000441819 155 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 SNORD45.4-201ENST00000516629 73 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 AL353149.1-201ENST00000610667 244 ntBASIC3.11□□□□□ -1.91
COL8A1P27658 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL8A1P27658 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.11□□□□□ -1.91
COL8A1P27658 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
COL8A1P27658 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL8A1P27658 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC3.1□□□□□ -1.91
COL8A1P27658 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
COL8A1P27658 Y_RNA.140-201ENST00000363474 103 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 Y_RNA.171-201ENST00000363760 102 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 RNU6-1163P-201ENST00000364516 107 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 Z98941.1-201ENST00000407764 100 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.1□□□□□ -1.91
COL8A1P27658 Z98742.3-201ENST00000418637 326 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 AC123900.1-201ENST00000420390 96 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.1□□□□□ -1.91
COL8A1P27658 AL109933.2-201ENST00000452651 260 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 MIR1270-201ENST00000459320 83 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 MIR548AE2-201ENST00000583456 67 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 ZNF861P-201ENST00000588126 639 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 AC002076.2-201ENST00000617362 122 ntBASIC3.1□□□□□ -1.91
COL8A1P27658 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL8A1P27658 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.1□□□□□ -1.91
COL8A1P27658 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL8A1P27658 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.1□□□□□ -1.91
COL8A1P27658 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
COL8A1P27658 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.09□□□□□ -1.91
COL8A1P27658 AL021368.2-201ENST00000606125 5352 ntBASIC3.09□□□□□ -1.91
COL8A1P27658 MIR422A-201ENST00000362286 90 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms