Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.26□□□□□ -2.05
PCDHA3Q9Y5H8 RN7SL853P-201ENST00000617250 223 ntBASIC2.26□□□□□ -2.05
PCDHA3Q9Y5H8 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
PCDHA3Q9Y5H8 ZNF658B-202ENST00000615961 3375 ntBASIC2.26□□□□□ -2.05
PCDHA3Q9Y5H8 AC100821.1-201ENST00000523153 2479 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 RNU6-653P-201ENST00000363074 106 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 RNU6-674P-201ENST00000363831 107 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 MIR526A2-201ENST00000390198 65 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 AC245047.4-201ENST00000433189 144 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 AC091021.1-201ENST00000468051 388 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 AC055731.1-201ENST00000474387 401 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 RNU6-138P-201ENST00000515952 107 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 SCARNA16.3-201ENST00000516595 184 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 AL590808.1-201ENST00000618696 141 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 AC068700.1-201ENST00000565862 3754 ntBASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PCDHA3Q9Y5H8 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 MIR411-201ENST00000362239 96 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 Y_RNA.785-201ENST00000384290 109 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 RNU6-907P-201ENST00000390924 102 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 RNU6-717P-201ENST00000459076 104 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 RPL23AP54-201ENST00000495129 419 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 AC100767.1-201ENST00000528178 123 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 AC011604.1-201ENST00000545978 196 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 Z83818.1-201ENST00000603584 150 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 MIR6132-201ENST00000622083 109 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 AC012640.5-201ENST00000623897 319 ntBASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
PCDHA3Q9Y5H8 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 SNORA63D-201ENST00000364359 132 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 Y_RNA.274-201ENST00000364714 101 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 SNORA8.3-201ENST00000384679 139 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 MIR626-201ENST00000385032 94 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 RPS27P1-201ENST00000450552 247 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 RNU6-437P-201ENST00000459408 95 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 TRBV12-1-201ENST00000479785 344 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 AC091544.4-201ENST00000555268 342 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 SNORD53-201ENST00000579969 78 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 AC022217.4-201ENST00000604389 163 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 Y_RNA.802-201ENST00000614892 130 ntBASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.23□□□□□ -2.05
PCDHA3Q9Y5H8 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 RNA5SP160-201ENST00000364866 120 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 Y_RNA.293-201ENST00000364908 93 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 Y_RNA.297-201ENST00000364950 91 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AL021397.1-201ENST00000451806 248 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AL138752.1-201ENST00000452964 351 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AC025033.1-201ENST00000463883 194 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AC064859.1-201ENST00000624741 174 ntBASIC2.22□□□□□ -2.05
PCDHA3Q9Y5H8 AL596028.1-201ENST00000326971 197 ntBASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 RNU4-53P-201ENST00000410828 140 ntBASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 AP002004.2-201ENST00000531656 154 ntBASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 CBX3P4-201ENST00000538909 354 ntBASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 MIR4724-201ENST00000579485 89 ntBASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.06
PCDHA3Q9Y5H8 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 RNU6-112P-201ENST00000363599 104 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 MIR520A-201ENST00000384862 85 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 AL606517.2-201ENST00000442855 241 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 Y_RNA.644-201ENST00000459006 113 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 Y_RNA.674-201ENST00000516362 113 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 RNU1-40P-201ENST00000516816 164 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 RNU1-97P-201ENST00000516872 164 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 AL929325.1-201ENST00000603096 117 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.2□□□□□ -2.06
PCDHA3Q9Y5H8 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 Y_RNA.29-201ENST00000362570 113 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 Y_RNA.203-201ENST00000364106 102 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 Y_RNA.267-201ENST00000364679 109 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 Y_RNA.308-201ENST00000365043 101 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 RNA5SP138-201ENST00000365098 114 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 RNU6-296P-201ENST00000384608 107 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 RNU2-64P-201ENST00000411315 191 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 AC233266.1-201ENST00000454518 96 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 RNY3P16-201ENST00000516338 101 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 RNU6-1291P-201ENST00000516591 104 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 SNORA81.3-201ENST00000517283 198 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 MIR2681-201ENST00000581814 105 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 MIR3945-201ENST00000581853 98 ntBASIC2.19□□□□□ -2.06
PCDHA3Q9Y5H8 AC242852.1-201ENST00000612151 96 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms