Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-220P-201ENST00000390919 107 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-1275P-201ENST00000391087 107 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 MTATP8P2-201ENST00000435212 202 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 RNU7-164P-201ENST00000459221 62 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 RNU7-70P-201ENST00000516941 66 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-667P-201ENST00000517186 102 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 IGKV2-26-201ENST00000518305 343 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 AC004486.1-201ENST00000546846 233 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 AL359075.3-201ENST00000613288 217 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-349P-201ENST00000362402 107 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RNU4-35P-201ENST00000362588 141 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 SNORA63D-201ENST00000364359 132 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.298-201ENST00000364960 107 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-1134P-201ENST00000365156 101 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.333-201ENST00000365274 102 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 SNORA70.4-201ENST00000365509 134 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-1189P-201ENST00000383958 107 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 MIR449B-201ENST00000384995 97 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 AC003685.2-201ENST00000422795 395 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RN7SL442P-201ENST00000473804 320 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 AC025518.1-201ENST00000479856 347 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RNU7-123P-201ENST00000515911 60 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-638P-201ENST00000516582 104 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 AC104027.1-201ENST00000521887 300 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 AL353149.1-201ENST00000610667 244 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.818-201ENST00000618813 71 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 MIR338-201ENST00000636369 67 ntBASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.01□□□□□ -1.93
HIF3AQ9Y2N7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC245060.5-201ENST00000610778 3293 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 SNORA71.3-201ENST00000362582 128 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 SNORD68-201ENST00000363214 84 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.265-201ENST00000364677 108 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-1104P-201ENST00000384723 104 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 MIR522-201ENST00000385071 87 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 SRIP3-201ENST00000413200 219 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC018868.1-201ENST00000491307 315 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 SNORD36C-201ENST00000516733 66 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-341P-201ENST00000516973 96 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.714-201ENST00000517065 90 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC026403.1-201ENST00000518938 295 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AL358944.1-201ENST00000528537 144 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC084364.2-201ENST00000546924 395 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC012314.7-201ENST00000619693 93 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 AC134878.1-201ENST00000619901 243 ntBASIC3□□□□□ -1.93
HIF3AQ9Y2N7 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3□□□□□ -1.93
HIF3AQ9Y2N7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
HIF3AQ9Y2N7 FAM35CP-201ENST00000554755 2470 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 SNORA1B-201ENST00000362535 133 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 RNA5SP383-201ENST00000362934 120 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-805P-201ENST00000365643 106 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 MIR548D2-201ENST00000384955 97 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 RPL39P25-201ENST00000449384 154 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 RNU6-904P-201ENST00000516206 101 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 MIR3616-201ENST00000584070 92 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 uc_338.1-201ENST00000612113 180 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 AC012442.3-202ENST00000636742 206 ntBASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.99□□□□□ -1.93
HIF3AQ9Y2N7 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 ZNF720P1-201ENST00000562403 1939 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.99-201ENST00000363138 105 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.242-201ENST00000364473 110 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 SNORA73.2-201ENST00000364946 201 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.342-201ENST00000365352 113 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 RNY1P6-201ENST00000384193 109 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 MIR218-2-201ENST00000385006 110 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 MIR450A2-201ENST00000385022 100 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 RNA5SP323-201ENST00000391094 133 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 RNA5SP229-201ENST00000410809 99 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 CST9LP2-201ENST00000437612 320 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 PGBD4P5-201ENST00000445958 426 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 PRSS3P4-201ENST00000453323 162 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 AC107297.1-201ENST00000459991 176 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 SNORA64.4-201ENST00000516632 81 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 RNU1-142P-201ENST00000516682 145 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 SCARNA20.6-201ENST00000517251 106 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 AC091544.4-201ENST00000555268 342 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 AC087685.1-201ENST00000587507 141 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 U6.108-201ENST00000637764 58 ntBASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
HIF3AQ9Y2N7 SNORA63.1-201ENST00000362493 131 ntBASIC2.97□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.37-201ENST00000362606 108 ntBASIC2.97□□□□□ -1.93
HIF3AQ9Y2N7 RNU1-70P-201ENST00000362618 164 ntBASIC2.97□□□□□ -1.93
HIF3AQ9Y2N7 Y_RNA.107-201ENST00000363190 121 ntBASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 166.4 ms