Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC091178.2-201ENST00000584401 117 ntBASIC2.11□□□□□ -2.07
VPS4AQ9UN37 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.11□□□□□ -2.07
VPS4AQ9UN37 AC013791.1-201ENST00000616619 62 ntBASIC2.11□□□□□ -2.07
VPS4AQ9UN37 AC073349.3-201ENST00000617616 186 ntBASIC2.11□□□□□ -2.07
VPS4AQ9UN37 AL359851.1-201ENST00000569460 4997 ntBASIC2.11□□□□□ -2.07
VPS4AQ9UN37 AC068700.1-201ENST00000565862 3754 ntBASIC2.11□□□□□ -2.07
VPS4AQ9UN37 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VPS4AQ9UN37 Y_RNA.65-201ENST00000362846 100 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 SNORA33-201ENST00000363664 130 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 Y_RNA.292-201ENST00000364904 97 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 Y_RNA.590-201ENST00000410140 107 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 RNA5SP511-201ENST00000410487 115 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
VPS4AQ9UN37 MTND2P29-201ENST00000438595 412 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 AC055731.1-201ENST00000474387 401 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.1□□□□□ -2.07
VPS4AQ9UN37 SNORD116-28-201ENST00000516123 91 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 RNU6-1278P-201ENST00000516130 107 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 RNU7-115P-201ENST00000516433 55 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 RNU6-63P-201ENST00000516690 95 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.1□□□□□ -2.07
VPS4AQ9UN37 MIR4529-201ENST00000578110 78 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 AP003357.1-201ENST00000604497 148 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 AC005972.2-201ENST00000604690 348 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 AL359075.3-201ENST00000613288 217 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 AC009831.4-201ENST00000620744 325 ntBASIC2.1□□□□□ -2.07
VPS4AQ9UN37 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.1□□□□□ -2.07
VPS4AQ9UN37 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VPS4AQ9UN37 SNORA16B-201ENST00000364674 135 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.09□□□□□ -2.07
VPS4AQ9UN37 MIR597-201ENST00000384968 97 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
VPS4AQ9UN37 SNORA48.1-201ENST00000390879 135 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 RNU11-3P-201ENST00000391111 133 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 SNORA11.4-201ENST00000408823 129 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 RNU2-40P-201ENST00000410833 196 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS4AQ9UN37 RNU7-141P-201ENST00000459304 62 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 RNU6-295P-201ENST00000516901 104 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.09□□□□□ -2.07
VPS4AQ9UN37 MIR5692C2-201ENST00000577959 77 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 AP000942.3-201ENST00000603702 160 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 MIR6132-201ENST00000622083 109 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 MIR219B-201ENST00000637023 88 ntBASIC2.09□□□□□ -2.07
VPS4AQ9UN37 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
VPS4AQ9UN37 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
VPS4AQ9UN37 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.08□□□□□ -2.08
VPS4AQ9UN37 RNU6-899P-201ENST00000363947 107 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 RNU6-1048P-201ENST00000364054 107 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 U8.7-201ENST00000364940 136 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.304-201ENST00000365011 112 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 RNU6-907P-201ENST00000390924 102 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 RNA5SP450-201ENST00000411206 102 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS4AQ9UN37 BTF3P11-201ENST00000426582 477 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.08□□□□□ -2.08
VPS4AQ9UN37 AC010409.1-201ENST00000487382 476 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.08□□□□□ -2.08
VPS4AQ9UN37 RNU6-1053P-201ENST00000515930 101 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 AC130289.1-201ENST00000577321 73 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 AC090425.1-201ENST00000610007 140 ntBASIC2.08□□□□□ -2.08
VPS4AQ9UN37 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.08□□□□□ -2.08
VPS4AQ9UN37 RNU6-653P-201ENST00000363074 106 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.226-201ENST00000364337 114 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 RNU6-200P-201ENST00000364743 107 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.515-201ENST00000384535 112 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 MIR17-201ENST00000385012 84 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 MIR221-201ENST00000385135 110 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 SNORA48.3-201ENST00000391081 134 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.626-201ENST00000411288 95 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 AC245047.4-201ENST00000433189 144 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
VPS4AQ9UN37 RNA5SP200-201ENST00000516360 103 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 RNU1-142P-201ENST00000516682 145 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 RNU7-116P-201ENST00000516940 62 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 AC073413.2-201ENST00000604332 360 ntBASIC2.07□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.200-201ENST00000364018 102 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 RNU6-144P-201ENST00000383951 107 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 SNORA64-201ENST00000384674 134 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 RNU11-5P-201ENST00000391216 129 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 MIR1298-201ENST00000408783 112 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 RNU6-1186P-201ENST00000410429 97 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 AL356379.1-201ENST00000414105 126 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 AL163195.1-201ENST00000496941 348 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.700-201ENST00000516806 100 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 AC127455.1-201ENST00000565496 145 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 SUB1P4-201ENST00000566062 339 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 MIR5688-201ENST00000580619 83 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 MIR548AY-201ENST00000617669 107 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 MIR7111-201ENST00000619751 72 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 AL365265.1-201ENST00000621045 234 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
VPS4AQ9UN37 AC018630.2-201ENST00000534866 2403 ntBASIC2.06□□□□□ -2.08
VPS4AQ9UN37 RNU6-1019P-201ENST00000364424 107 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 Y_RNA.785-201ENST00000384290 109 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 MIR520G-201ENST00000385064 90 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 SNORA26.9-201ENST00000391322 122 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 RNA5SP501-201ENST00000410990 112 ntBASIC2.05□□□□□ -2.08
VPS4AQ9UN37 RPS4XP11-201ENST00000446897 772 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 172.7 ms